| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485569
Identifier: 103485569
GI number: 103485569
Start: 77512
End: 78048
Strand: Direct
Name: 103485569
Synonym: Sala_0071
Alternate gene names: NA
Gene position: 77512-78048 (Clockwise)
Preceding gene: 103485563
Following gene: 103485576
Centisome position: 2.32
GC content: 60.71
Gene sequence:
>537_bases TTGACGAACGCTGGCGACGCCAAAGCCGCCGGAATTTTATCGGGAGAAGTCATGCCCATCGTCAGCCGCTCATTGCTCGC GCTCTTCTTCCCTTCGATGCTAATGGTCACACCGGCCTTCGCGGCACCGCCGCCGCCGCGGATCGATGTGATTGCCTACT CCGCTGACCTTGGCGAAGAAGGCCTTGCTGAAGCCTATGTTACGCTGGCGGCCTACTCCGGCGCGTTCGAGCGGGCTGCC CCGGGGACTGATCGCAGTAAGGTGCGGGCATGCGCAGCCTCGAATAGCGAGGCCTGCATTCGGGCCATCCTCACCGCACG TGGAGGGGCAGCTGTGATCATCGTCGTGCAAGGGGCGGGAGTTGGCATCCAGAAATGGACTTGCTTCGGCTCGGGTGGCA CCCCGGTCGACGCCGCAAAACAGACAGCCACGATCAATTTGCAAGTTGCTTTCTTTGGCGAACGGCAGGCTAAATTTCAG CAATCTCTGTCTGCAACTGCCTGTATCATGTCGGCTGCCGCCGAGAGTGGGTGGTAA
Upstream 100 bases:
>100_bases CTCCCGGCTCCGGGCTAACCGACACGTCGTAGCGAAGCAATTTGGAAATATGGCGGGTAGCCGCTAAGCAAAACGCCGGA CCGTAAGTCGCGGAATTCCA
Downstream 100 bases:
>100_bases AGATCACCGTGAAATTGTCGACGAACGTCAGTTTCTAAGCCCGAGTCCTCGAAGTTGCAAAATGGCGATCTCCAGATGCT GCGGCCGCCGCACTCTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MTNAGDAKAAGILSGEVMPIVSRSLLALFFPSMLMVTPAFAAPPPPRIDVIAYSADLGEEGLAEAYVTLAAYSGAFERAA PGTDRSKVRACAASNSEACIRAILTARGGAAVIIVVQGAGVGIQKWTCFGSGGTPVDAAKQTATINLQVAFFGERQAKFQ QSLSATACIMSAAAESGW
Sequences:
>Translated_178_residues MTNAGDAKAAGILSGEVMPIVSRSLLALFFPSMLMVTPAFAAPPPPRIDVIAYSADLGEEGLAEAYVTLAAYSGAFERAA PGTDRSKVRACAASNSEACIRAILTARGGAAVIIVVQGAGVGIQKWTCFGSGGTPVDAAKQTATINLQVAFFGERQAKFQ QSLSATACIMSAAAESGW >Mature_177_residues TNAGDAKAAGILSGEVMPIVSRSLLALFFPSMLMVTPAFAAPPPPRIDVIAYSADLGEEGLAEAYVTLAAYSGAFERAAP GTDRSKVRACAASNSEACIRAILTARGGAAVIIVVQGAGVGIQKWTCFGSGGTPVDAAKQTATINLQVAFFGERQAKFQQ SLSATACIMSAAAESGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18176; Mature: 18045
Theoretical pI: Translated: 6.48; Mature: 6.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNAGDAKAAGILSGEVMPIVSRSLLALFFPSMLMVTPAFAAPPPPRIDVIAYSADLGEE CCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCC GLAEAYVTLAAYSGAFERAAPGTDRSKVRACAASNSEACIRAILTARGGAAVIIVVQGAG HHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCC VGIQKWTCFGSGGTPVDAAKQTATINLQVAFFGERQAKFQQSLSATACIMSAAAESGW CCEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TNAGDAKAAGILSGEVMPIVSRSLLALFFPSMLMVTPAFAAPPPPRIDVIAYSADLGEE CCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCC GLAEAYVTLAAYSGAFERAAPGTDRSKVRACAASNSEACIRAILTARGGAAVIIVVQGAG HHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCC VGIQKWTCFGSGGTPVDAAKQTATINLQVAFFGERQAKFQQSLSATACIMSAAAESGW CCEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA