| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is dipZ [H]
Identifier: 103485572
GI number: 103485572
Start: 80291
End: 81436
Strand: Reverse
Name: dipZ [H]
Synonym: Sala_0074
Alternate gene names: 103485572
Gene position: 81436-80291 (Counterclockwise)
Preceding gene: 103485573
Following gene: 103485571
Centisome position: 2.43
GC content: 63.53
Gene sequence:
>1146_bases TTGAAGGGCTGGCACGCATCAGAAGGAAATAGGTCAATGCTACGCAAAAGACGCGGTTTGGGATTTGCGGCGATCGCGGT TACCGCGGCGATCGGCGCGGTCGTCTATTGCTTCGGCGACATACCGGGCGGCCGCTTGAACCCGACGCCCAGCCCGATCC CGAGCGCCGCCGCCGCCGAATATCCCGGCCAGCCGCTTGTGGCCCTTGCCGGCAACGGTCCCTGGCTCAACACGACTGAG CGCACGCCGCAGGCACTGCGCGGCAAAGTCGTTCTTGTCAATTTCTGGACCTATTCGTGCATAAACTCGCTGCGGCCCCT GCCCTATATTCGCGACTGGGCCGCGAAGTATAAAGACGACGGTCTGATCGTCATCGGTGTCCACACACCCGAATTCGCTT TCGAAAAGGATGGTGACAAGGTCCGACGCGCCGTGGCGGAACTCGGCGTCACCTGGCCGGTCAAGCTCGACAGCGACTAT GCGACCTGGAGGCTGTTCGGCAACGACGGCTGGCCAGGATTCTATTTCATCGATGCCAAAGGCCAGGTCCGCCACCATCG TCTCGGCGAGGGCGATTATGCGGCGTCCGAACGGCTGCTCCAGCAACTCCTCGCCGAAGCCAAGGCTGCGCCAATCAATG AAAAACTGACTGGCGACATCGGCAAGGGGATAGAGGCGGCTCCCGATTGGGACCAACTGCGCTCGCCCGAGACCTATGTC GGATACCGACAGGCCGACCGCCTCGCCGCGCCGCAACGGTTGAAGCGGGACGCTCCCCTCACCTATAGCCTTCCCTCTTC CGTCCCGGCCAACCAATGGGGCTTGGGCGGAGCATGGACCGTCGGCGCCGAGTCCGCACGCGCCGACGCCGCGTCGGCGA AGATACGCTATCGCTTCGAGGCGCGTGACCTGCACATGGTCCTCGGCGCGCGCGGCGACGGAACACCCGCCCGCTTCCGC GTGACGCTCGATGGTTTGCCGCCCGGAACAGATCATGGTGTGGATACCGATGCGAACGGCATGGGCACCGTTACCAAGGA CAGGCTCTACCAGCTCGTTCGCCAGTCCGCGGCCGTCAGAGCCCGGACATTCGAGATCGAATTCCTCGACCCCGGTGCTC GCGCCTATGTCTTCACCTTTGGATAG
Upstream 100 bases:
>100_bases TCCGGCATGACAAGCGGAACGTCGAACGCAAAGAATGTAACGTCCCTGCCCTCGCAACCGAAACGCACAGGCGCGGGGAA CGCAGCCGCATGTCCGGCCC
Downstream 100 bases:
>100_bases CTGTCGGTCTTGGCCGATCGTGGACAGTCTGGACCCTGCCTAAATATGCGCTGAAGCAGCCGCCGAGCCGAGCGCCGGGG ACCGAATTGGCGTCTCCATA
Product: thioredoxin-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAEYPGQPLVALAGNGPWLNTTE RTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDDGLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDY ATWRLFGNDGWPGFYFIDAKGQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFEARDLHMVLGARGDGTPARFR VTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVRARTFEIEFLDPGARAYVFTFG
Sequences:
>Translated_381_residues MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAEYPGQPLVALAGNGPWLNTTE RTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDDGLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDY ATWRLFGNDGWPGFYFIDAKGQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFEARDLHMVLGARGDGTPARFR VTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVRARTFEIEFLDPGARAYVFTFG >Mature_381_residues MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAEYPGQPLVALAGNGPWLNTTE RTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDDGLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDY ATWRLFGNDGWPGFYFIDAKGQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFEARDLHMVLGARGDGTPARFR VTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVRARTFEIEFLDPGARAYVFTFG
Specific function: Unknown
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI42476013, Length=120, Percent_Identity=35.8333333333333, Blast_Score=86, Evalue=5e-17, Organism=Drosophila melanogaster, GI116007528, Length=127, Percent_Identity=29.9212598425197, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR003834 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA; PF02683 DsbD [H]
EC number: NA
Molecular weight: Translated: 41584; Mature: 41584
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAE CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCHHHC YPGQPLVALAGNGPWLNTTERTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDD CCCCCEEEEECCCCCCCCCCCCHHHHCCCEEEEEEHHHHHHHHCCCCCHHHHHHHHHCCC GLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDYATWRLFGNDGWPGFYFIDAK CEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCEEEEEECC GQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV CCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHC GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFE CHHHHHHHCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEECCCCHHCCCCCCCEEEEEEE ARDLHMVLGARGDGTPARFRVTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVR CCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHE ARTFEIEFLDPGARAYVFTFG EEEEEEEEECCCCEEEEEEEC >Mature Secondary Structure MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAE CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCHHHC YPGQPLVALAGNGPWLNTTERTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDD CCCCCEEEEECCCCCCCCCCCCHHHHCCCEEEEEEHHHHHHHHCCCCCHHHHHHHHHCCC GLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDYATWRLFGNDGWPGFYFIDAK CEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCEEEEEECC GQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV CCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHC GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFE CHHHHHHHCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEECCCCHHCCCCCCCEEEEEEE ARDLHMVLGARGDGTPARFRVTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVR CCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHE ARTFEIEFLDPGARAYVFTFG EEEEEEEEECCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]