| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485573
Identifier: 103485573
GI number: 103485573
Start: 81527
End: 82579
Strand: Reverse
Name: 103485573
Synonym: Sala_0075
Alternate gene names: NA
Gene position: 82579-81527 (Counterclockwise)
Preceding gene: 103485574
Following gene: 103485572
Centisome position: 2.47
GC content: 61.92
Gene sequence:
>1053_bases ATGACCGATCATAGCGACACCGATCGCAGGCTTTTCCTCCAGACGGCCGGGCTTGGCGCAGCCGGAATGGCAATGACGGC CCTCGGCCTGCCCGGCACATCACAAGCCGCGCTACTTGCCCCGACGCGACCCATGGCCGCCGGCTCCTCTCCCACGTTGG GGCCGTTGCGGCAGATACGGGCAGGCGAACTGGACATCGCCTATATCGAAATGGGTCCGCCCAAGGGGCAGGTCGCCATT CTCTTACACGGCTGGCCGTATGACATCCATTGTTACGAAGAGGTCGCGCCGCTGCTTGCCAAGGCAGGCTACCGCGTGAT TATTCCCTATCTGCGCGGATATGGTGCCACGCGGTTCGTTGCGGCCGACACGCTGCGCAACGGTCAGCAAGCCGCGTTGG CACAGGATGTGATCGCGCTGATGGATGCGCTCAGGATCCAGACCACGACGGTTGCAGGATGCGACTGGGGTGCACGCACC GCCTGCATCGTTGCCGCGATCTGGCCCGAGCGCGTCACTGCACTGGTGTCGGTCAGCGGCTATCTCATCGGCAGTCAGCA GGCCAATGTCATGCCGCTACCTCCGAAAGCCGAGCTGAGCTGGTGGTACCAATTCTACTTTGCGACCGACCGCGGCGAGC GCGGTTATGAGGCCAATCGCAAGGAGTTCGCCAAACTCATCTGGCATACGGCATCGCCCGAATGGAAGTTCGATGATGCG ACCTTCGACCGATCGGCGCAGGCATTCGACAATCCCGACCATGTCGCGATCGTGATCCATAATTACCGCTGGCGATTGGG TGCGGCAGCAGGCGATCCGAAATATGATGCACTGGAAAAGCGTCTCGCCGAAAGCCCGACCATCGGCGTGCCGACGATCA CCCTTGAAGGCGACGCGAATGGCGCTCCGCACCCCGATCCAGCCGCCTATGCCAAGAAATTCACGGGGAAATACGCTCAC CGCAATATCACTGGCGGCATCGGGCATAATCTACCGCAAGAGGCGCCCAAGGCTTTTGCCGACGCCGTACTGCAGGCGGC GACTCCGGCATGA
Upstream 100 bases:
>100_bases CGATCGCGCGGTTGTCGCGTTCACCGTGCCGGCGACAACCACACCGCATCATTGATCCAAACCGCCGATCCCCTTGGGCA AACCAAAAAAGGATATCATC
Downstream 100 bases:
>100_bases CAAGCGGAACGTCGAACGCAAAGAATGTAACGTCCCTGCCCTCGCAACCGAAACGCACAGGCGCGGGGAACGCAGCCGCA TGTCCGGCCCTTGAAGGGCT
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold; Epoxide Hydrolase; Epoxide Hydrolase Protein; Alpha/Beta Hydrolase; Hydrolase; Alpha/Beta Family Hydrolase; Alpha/Beta Fold Family Hydrolase; Twin-Arginine Translocation Pathway Signal; Hydrolase Alpha/Beta Fold; Hydrolase Alpha/Beta Fold Family; Hydrolase Or Acyltransferase; GCN5-Related N-Acetyltransferase; Haloalkane Dehalogenase; Dehalogenase/Hydrolase; S33 Family Peptidase; Hydrolase Or Acyltransferase Of Alpha/Beta Superfamily; Epoxide Hydrolase EphF; Alpha/Beta Hydrolase Superfamily Protein; Epoxide Hydrolase EphB; Alpha/Beta Hydrolase Superfamily Hydrolase/Acyltransferase; Hydrolase Alpha/Beta Fold Family Protein; Alpha/Beta Fold Hydrolase
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MTDHSDTDRRLFLQTAGLGAAGMAMTALGLPGTSQAALLAPTRPMAAGSSPTLGPLRQIRAGELDIAYIEMGPPKGQVAI LLHGWPYDIHCYEEVAPLLAKAGYRVIIPYLRGYGATRFVAADTLRNGQQAALAQDVIALMDALRIQTTTVAGCDWGART ACIVAAIWPERVTALVSVSGYLIGSQQANVMPLPPKAELSWWYQFYFATDRGERGYEANRKEFAKLIWHTASPEWKFDDA TFDRSAQAFDNPDHVAIVIHNYRWRLGAAAGDPKYDALEKRLAESPTIGVPTITLEGDANGAPHPDPAAYAKKFTGKYAH RNITGGIGHNLPQEAPKAFADAVLQAATPA
Sequences:
>Translated_350_residues MTDHSDTDRRLFLQTAGLGAAGMAMTALGLPGTSQAALLAPTRPMAAGSSPTLGPLRQIRAGELDIAYIEMGPPKGQVAI LLHGWPYDIHCYEEVAPLLAKAGYRVIIPYLRGYGATRFVAADTLRNGQQAALAQDVIALMDALRIQTTTVAGCDWGART ACIVAAIWPERVTALVSVSGYLIGSQQANVMPLPPKAELSWWYQFYFATDRGERGYEANRKEFAKLIWHTASPEWKFDDA TFDRSAQAFDNPDHVAIVIHNYRWRLGAAAGDPKYDALEKRLAESPTIGVPTITLEGDANGAPHPDPAAYAKKFTGKYAH RNITGGIGHNLPQEAPKAFADAVLQAATPA >Mature_349_residues TDHSDTDRRLFLQTAGLGAAGMAMTALGLPGTSQAALLAPTRPMAAGSSPTLGPLRQIRAGELDIAYIEMGPPKGQVAIL LHGWPYDIHCYEEVAPLLAKAGYRVIIPYLRGYGATRFVAADTLRNGQQAALAQDVIALMDALRIQTTTVAGCDWGARTA CIVAAIWPERVTALVSVSGYLIGSQQANVMPLPPKAELSWWYQFYFATDRGERGYEANRKEFAKLIWHTASPEWKFDDAT FDRSAQAFDNPDHVAIVIHNYRWRLGAAAGDPKYDALEKRLAESPTIGVPTITLEGDANGAPHPDPAAYAKKFTGKYAHR NITGGIGHNLPQEAPKAFADAVLQAATPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37781; Mature: 37650
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDHSDTDRRLFLQTAGLGAAGMAMTALGLPGTSQAALLAPTRPMAAGSSPTLGPLRQIR CCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHC AGELDIAYIEMGPPKGQVAILLHGWPYDIHCYEEVAPLLAKAGYRVIIPYLRGYGATRFV CCCEEEEEEEECCCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCEEEEHHHHCCCCEEEE AADTLRNGQQAALAQDVIALMDALRIQTTTVAGCDWGARTACIVAAIWPERVTALVSVSG EHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEECHHHHHHHEEECE YLIGSQQANVMPLPPKAELSWWYQFYFATDRGERGYEANRKEFAKLIWHTASPEWKFDDA EEEECCCCCEEECCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC TFDRSAQAFDNPDHVAIVIHNYRWRLGAAAGDPKYDALEKRLAESPTIGVPTITLEGDAN CCCCCCHHCCCCCEEEEEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCC GAPHPDPAAYAKKFTGKYAHRNITGGIGHNLPQEAPKAFADAVLQAATPA CCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TDHSDTDRRLFLQTAGLGAAGMAMTALGLPGTSQAALLAPTRPMAAGSSPTLGPLRQIR CCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHC AGELDIAYIEMGPPKGQVAILLHGWPYDIHCYEEVAPLLAKAGYRVIIPYLRGYGATRFV CCCEEEEEEEECCCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCEEEEHHHHCCCCEEEE AADTLRNGQQAALAQDVIALMDALRIQTTTVAGCDWGARTACIVAAIWPERVTALVSVSG EHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEECHHHHHHHEEECE YLIGSQQANVMPLPPKAELSWWYQFYFATDRGERGYEANRKEFAKLIWHTASPEWKFDDA EEEECCCCCEEECCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC TFDRSAQAFDNPDHVAIVIHNYRWRLGAAAGDPKYDALEKRLAESPTIGVPTITLEGDAN CCCCCCHHCCCCCEEEEEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCC GAPHPDPAAYAKKFTGKYAHRNITGGIGHNLPQEAPKAFADAVLQAATPA CCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA