| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485565
Identifier: 103485565
GI number: 103485565
Start: 73686
End: 74876
Strand: Reverse
Name: 103485565
Synonym: Sala_0067
Alternate gene names: NA
Gene position: 74876-73686 (Counterclockwise)
Preceding gene: 103485566
Following gene: 103485564
Centisome position: 2.24
GC content: 66.83
Gene sequence:
>1191_bases ATGCGCACCTCGCTCGAGGTCGCCGACGTCTTCCGTACTGCTGGACCCGCGTATCGCACCGCGCATGCCGGGCATCTGAG CCTGCATCAGCTCAAGATCATGTCGGCGATCGAACATTGCCGCACCGCCGCCCTAGGTGGACACGTCGAGGCTTGCACCG ACTGCGGGCATTGGCGGATCGCCTACAACAGTTGCCGCAACCGGCACTGCCCGCGGTGCCAGGGCGCTGCTGCACGCACC TGGCTCGAGGCCCGCGAGGCCGACCTGCTCCCGGTCGGCTATTTCCACGTCGTCTTCACCCTCCCTGCCGAGGTCGCTGC GATCGCCTTCACCAACAAGGCGCTGGTCTATGATCTTCTGTTCAAGGCCGCGGCCGATACGATGCTGACCATCGCCGCTG ATCCCAAGCATCTCGGCGCCCGGATCGGCATCACCGCCGTCCTTCACACATGGGGATCCGCCCTCACCCATCATCCCCAC ATCCACATGATCGTGCCGGGCGGCGGCATATCGCGCGATGGGACGCGCTGGATATCCGCACGCCCCGCCTTCCTGCTCCC CGTGCGCGTGCTCGGCGCGCTTTTCCGCCGCCTGTTCCTGACCCGCCTTCGCGCGCTGCACGATGACGGCAAGCTCGCTT TCTTTGGCAGCCTCACGCATTTTGCCGAACGACGAGCATTCCTGCGGCACCTCTCTCCCGTCAGGAAGAAGCGCTGGGTG GTCTATGCCAAGCCGCCGTTCGCCGGGCCCGAAGCGGTGCTCGCCTATCTGTCGCGCTACACCCACCGGGTTGCGATATC GAACAGCCGCCTCCTCCGCTTCGACGAGGCCGGGGTCACCTTCCGCTACAAGGATTATCGCCAGGGCGGCGCCAACCGCC AGCAGGTCATGACCCTCGCCGCCGACGAGTTCATTCGCCGCTTCCTCCTCCACGCCCTGCCCCGCGGGTTCCACCGCATC CGCCACTATGGGCTCCTCGCCAGCGCTAGGCGCAAGGATCATCTCGAACGCGCCCGCCGTCTGCTCAATGTCGCCCCCGC GCCGGCCGACGATCTGCCCGCCGAGCTCGAAGCTCAGCCGCTGTGCCCGTGCTGCGGCGGCACCATGGCGATCATCGAGG TCTTCGAACGTCGCTATCAACCCCGAGCGCCACCACCGCCCTCACTCTCATCCGGGACACAGGCGCCGTGA
Upstream 100 bases:
>100_bases ACTTGCAGGTCGCAACGAAGACGACGCGCAAGGTGACCAGCCCGCTCGACAGGCTCGCGCTGGCATCGCCCATCGAGGAG CCACCCGACGGCTGAGGCTG
Downstream 100 bases:
>100_bases CCCGGCACGGCTCATCCACTCCCATACCCGGCGCAGCCCTGCGTCCGGAAGCGGACCCGCTTGCGCTCGCCCTGCCGAAA AGCAGACGCCGCTATACTAA
Product: putative transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRIAYNSCRNRHCPRCQGAAART WLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLLFKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPH IHMIVPGGGISRDGTRWISARPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLAADEFIRRFLLHALPRGFHRI RHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQPLCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP
Sequences:
>Translated_396_residues MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRIAYNSCRNRHCPRCQGAAART WLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLLFKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPH IHMIVPGGGISRDGTRWISARPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLAADEFIRRFLLHALPRGFHRI RHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQPLCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP >Mature_396_residues MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRIAYNSCRNRHCPRCQGAAART WLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLLFKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPH IHMIVPGGGISRDGTRWISARPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLAADEFIRRFLLHALPRGFHRI RHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQPLCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 32 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007069 [H]
Pfam domain/function: PF04986 Transposase_32 [H]
EC number: NA
Molecular weight: Translated: 44193; Mature: 44193
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRI CCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEE AYNSCRNRHCPRCQGAAARTWLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLL EHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH FKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPHIHMIVPGGGISRDGTRWISA HHHHHCCEEEEECCHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECC RPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCHHHHCCEE VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLA EEECCCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCEEEEHHHHCCCCCHHHHHHHH ADEFIRRFLLHALPRGFHRIRHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRI CCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEE AYNSCRNRHCPRCQGAAARTWLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLL EHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH FKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPHIHMIVPGGGISRDGTRWISA HHHHHCCEEEEECCHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECC RPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCHHHHCCEE VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLA EEECCCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCEEEEHHHHCCCCCHHHHHHHH ADEFIRRFLLHALPRGFHRIRHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]