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The map label for this gene is xerD [C]

Identifier: 103485566

GI number: 103485566

Start: 74882

End: 75790

Strand: Reverse

Name: xerD [C]

Synonym: Sala_0068

Alternate gene names: 103485566

Gene position: 75790-74882 (Counterclockwise)

Preceding gene: 103485567

Following gene: 103485565

Centisome position: 2.27

GC content: 66.01

Gene sequence:

>909_bases
ATGAATGAGCTTATCCAGATTGGCCCGATCAGCCCGCTACGCCAGCGCCTGCTCGACGACATGGCGATGCGGCGGTTCGG
GCCGGAGACGCAGCGTAATTATCTGCGCGACGTCGGACGGTTCGCGACCTGGCTCGGGCGCTCACCGCACACCGCAAGTG
CGGAGGAGGTCCGCCAGTTCCAGATCGATCAGCAGCAAGCGGGCGTTCCGGTGCCGACGATGAACAGCATCGTCAGTGCG
CTCCGCTTCTTCTTCACCGAGACGCTCGACCGCCCCGATCTCGCGCGCAAGCTGATCCGCGCCAAGCAGGTTCGCAAGAT
CCCCGTCGTCCTGACCATGGCCGAGGTGAAGCGGCTGCTCGATGCGACCCGCTGTCTCAAGCACCAGGCTGCACTGTCGG
TTGCGTACGGCGCCGGGCTGCGCGTCGCCGAGGTCTCAGCGCTCAAGGTCAGCAATATCGACAGCAAGCGCATGCTGCTG
CGTGTCGAGCGCGGTAAAGGCGGACGTGACCGCAACGCCATGCTGCCCGAAGGCTTGCTCCTGCTGCTGCGCGACTGGTG
GCGCGCCGGACGACAGCAGGGCATTTTGTATCGCGACGGCTGGCTCTTTCCCGGACAGGGCGCAGCGGCCCATATCAGCA
CCCGCCAGCTCCACCGCGTCGTCGTCGAGGCGGCTGAGGCGGCCGATATCGACAAGCGCGTCGGGCCGCACACCTTGCGC
CACAGCTTTGCCACCCACCTGCTCGAGGACGGCGTCAACATCCGCGTCATCCAGGCGCTGCTCGGACACGCCAACCTCAA
TACCACCGCCTTTTACTTGCAGGTCGCAACGAAGACGACGCGCAAGGTGACCAGCCCGCTCGACAGGCTCGCGCTGGCAT
CGCCCATCGAGGAGCCACCCGACGGCTGA

Upstream 100 bases:

>100_bases
GCTATTGTCGAGGTAAAGCCGTCCAGCGAGCGCCGCATGTGATTGAACGTCGGCGGCCATAGGCAGACCCTTTCGACTCC
TTCAACTGAGGAGTCGAACG

Downstream 100 bases:

>100_bases
GGCTGATGCGCACCTCGCTCGAGGTCGCCGACGTCTTCCGTACTGCTGGACCCGCGTATCGCACCGCGCATGCCGGGCAT
CTGAGCCTGCATCAGCTCAA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNELIQIGPISPLRQRLLDDMAMRRFGPETQRNYLRDVGRFATWLGRSPHTASAEEVRQFQIDQQQAGVPVPTMNSIVSA
LRFFFTETLDRPDLARKLIRAKQVRKIPVVLTMAEVKRLLDATRCLKHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLL
RVERGKGGRDRNAMLPEGLLLLLRDWWRAGRQQGILYRDGWLFPGQGAAAHISTRQLHRVVVEAAEAADIDKRVGPHTLR
HSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKVTSPLDRLALASPIEEPPDG

Sequences:

>Translated_302_residues
MNELIQIGPISPLRQRLLDDMAMRRFGPETQRNYLRDVGRFATWLGRSPHTASAEEVRQFQIDQQQAGVPVPTMNSIVSA
LRFFFTETLDRPDLARKLIRAKQVRKIPVVLTMAEVKRLLDATRCLKHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLL
RVERGKGGRDRNAMLPEGLLLLLRDWWRAGRQQGILYRDGWLFPGQGAAAHISTRQLHRVVVEAAEAADIDKRVGPHTLR
HSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKVTSPLDRLALASPIEEPPDG
>Mature_302_residues
MNELIQIGPISPLRQRLLDDMAMRRFGPETQRNYLRDVGRFATWLGRSPHTASAEEVRQFQIDQQQAGVPVPTMNSIVSA
LRFFFTETLDRPDLARKLIRAKQVRKIPVVLTMAEVKRLLDATRCLKHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLL
RVERGKGGRDRNAMLPEGLLLLLRDWWRAGRQQGILYRDGWLFPGQGAAAHISTRQLHRVVVEAAEAADIDKRVGPHTLR
HSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKVTSPLDRLALASPIEEPPDG

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=285, Percent_Identity=31.2280701754386, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790244, Length=264, Percent_Identity=30.3030303030303, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790767, Length=178, Percent_Identity=26.9662921348315, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33824; Mature: 33824

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELIQIGPISPLRQRLLDDMAMRRFGPETQRNYLRDVGRFATWLGRSPHTASAEEVRQF
CCCCEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QIDQQQAGVPVPTMNSIVSALRFFFTETLDRPDLARKLIRAKQVRKIPVVLTMAEVKRLL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHEEEHHHHHHHH
DATRCLKHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLLRVERGKGGRDRNAMLPEGLL
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCHHHHH
LLLRDWWRAGRQQGILYRDGWLFPGQGAAAHISTRQLHRVVVEAAEAADIDKRVGPHTLR
HHHHHHHHHHHHCCCEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
HSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKVTSPLDRLALASPIEEPP
HHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCC
DG
CC
>Mature Secondary Structure
MNELIQIGPISPLRQRLLDDMAMRRFGPETQRNYLRDVGRFATWLGRSPHTASAEEVRQF
CCCCEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QIDQQQAGVPVPTMNSIVSALRFFFTETLDRPDLARKLIRAKQVRKIPVVLTMAEVKRLL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHEEEHHHHHHHH
DATRCLKHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLLRVERGKGGRDRNAMLPEGLL
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCHHHHH
LLLRDWWRAGRQQGILYRDGWLFPGQGAAAHISTRQLHRVVVEAAEAADIDKRVGPHTLR
HHHHHHHHHHHHCCCEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
HSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKVTSPLDRLALASPIEEPP
HHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCC
DG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]