| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485550
Identifier: 103485550
GI number: 103485550
Start: 57375
End: 57854
Strand: Reverse
Name: 103485550
Synonym: Sala_0052
Alternate gene names: NA
Gene position: 57854-57375 (Counterclockwise)
Preceding gene: 103485551
Following gene: 103485549
Centisome position: 1.73
GC content: 64.38
Gene sequence:
>480_bases ATGGTATCGTCGGCTGATTCCTTTCGCCTGTCCTGGCTCGGCTGGTGGCGCCTTGTAGGTCAGCTGCGCCGGCGGGGTCG CGGTATCCGCGAAAGCGGTGCGTTCCTGCTGGGACATCGCCATTCCGGGCCGGGCGTCGTCACGGACTTCGTCTTCTACG ATGAGATCGATCCTGACGCATTGTCGCGAGGCCATGTCCATCTTTCGGGCCAAGCGCTCGGCAAGGTGTGGGACCGCTGT GGCGTAAGGGGATTGGAAGTGCTCGCAGACGTGCACACGCATCCCGGCAGCGCCGGGCAGAGCGACTCCGACCGCGCGTA CCCGATGATCGCGATCAAGGGGCATACAGCTCTCATCATTCCCGCCTTCGCCCGCTCGGCGACCAACCTTCGCGGTGTCG GCGTCTATCGCCATCTCGGTGCCGGCAACTGGATTTCCCTGCCGTCGCCCAAAGCGGGTTGGCGCGGCATCACCTTTTGA
Upstream 100 bases:
>100_bases GACTGGCCGACGCAATATCCGCACCTAGTCTGGAGGCCGGATGTCGGTCTCATCCAGTACCTCGCCGAAGTGCATCGGTT ACTCAACATGCGAGGCTATC
Downstream 100 bases:
>100_bases AGGGTTCGTTTCGATGCATCACAGCGACTTCACTGCCTTCCTCGATGGCTTCAATCGGCTGGCCAAACTCGATCTCGACC TTGGCGACGCATCCTGTCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 159
Protein sequence:
>159_residues MVSSADSFRLSWLGWWRLVGQLRRRGRGIRESGAFLLGHRHSGPGVVTDFVFYDEIDPDALSRGHVHLSGQALGKVWDRC GVRGLEVLADVHTHPGSAGQSDSDRAYPMIAIKGHTALIIPAFARSATNLRGVGVYRHLGAGNWISLPSPKAGWRGITF
Sequences:
>Translated_159_residues MVSSADSFRLSWLGWWRLVGQLRRRGRGIRESGAFLLGHRHSGPGVVTDFVFYDEIDPDALSRGHVHLSGQALGKVWDRC GVRGLEVLADVHTHPGSAGQSDSDRAYPMIAIKGHTALIIPAFARSATNLRGVGVYRHLGAGNWISLPSPKAGWRGITF >Mature_159_residues MVSSADSFRLSWLGWWRLVGQLRRRGRGIRESGAFLLGHRHSGPGVVTDFVFYDEIDPDALSRGHVHLSGQALGKVWDRC GVRGLEVLADVHTHPGSAGQSDSDRAYPMIAIKGHTALIIPAFARSATNLRGVGVYRHLGAGNWISLPSPKAGWRGITF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17337; Mature: 17337
Theoretical pI: Translated: 11.00; Mature: 11.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSSADSFRLSWLGWWRLVGQLRRRGRGIRESGAFLLGHRHSGPGVVTDFVFYDEIDPDA CCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCHHH LSRGHVHLSGQALGKVWDRCGVRGLEVLADVHTHPGSAGQSDSDRAYPMIAIKGHTALII HCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEE PAFARSATNLRGVGVYRHLGAGNWISLPSPKAGWRGITF ECHHCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCC >Mature Secondary Structure MVSSADSFRLSWLGWWRLVGQLRRRGRGIRESGAFLLGHRHSGPGVVTDFVFYDEIDPDA CCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCHHH LSRGHVHLSGQALGKVWDRCGVRGLEVLADVHTHPGSAGQSDSDRAYPMIAIKGHTALII HCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEE PAFARSATNLRGVGVYRHLGAGNWISLPSPKAGWRGITF ECHHCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA