Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485549

Identifier: 103485549

GI number: 103485549

Start: 55994

End: 57361

Strand: Reverse

Name: 103485549

Synonym: Sala_0051

Alternate gene names: NA

Gene position: 57361-55994 (Counterclockwise)

Preceding gene: 103485550

Following gene: 103485548

Centisome position: 1.71

GC content: 64.25

Gene sequence:

>1368_bases
ATGCATCACAGCGACTTCACTGCCTTCCTCGATGGCTTCAATCGGCTGGCCAAACTCGATCTCGACCTTGGCGACGCATC
CTGTCCCGAGACCGCAATGGCTCGCCTGCGCGGCTATCGAGCGCACATTGCGGCCGGGCCGGAGGTAACGGAGAGCATCG
CTCACCAGATCGCGTTGCTGACATTCGTCAATATCGCATCACGCTTTGCGCTCGGCGGGGTGACGGTCTCCGGGATCGCG
GATGTTCCATTGCTCGCACCTTGGCACGGAGACAGCCTGGCATCCGCGGTCGAAATGCTCGGTGGCGCGACCGCAGACTT
GGCCGAGGAGACACCCGTCGTACTCTTGGGCAGCGCGACCACCCCGGCGGAGCGCGGCGGCTGTCAAATCACCTTTGCCG
GATGGCGAGGCGGTGTCGTTCCGCTCGGCGGTTCCAGGCTGGATGAAAAGGAGACAGTCGCGGCGGCCGCGGTGCTAGCC
GGATCTTTGGCCGCCGCGGAAATATTCGCCATGCTGCGGGACGAAATCGGCGCCGGTTGCCGCGACCATGGGCTTTCGAT
CTGGCGGCCGGACGGGGATGAGGACTGGCGTTCGCCTGCAAGCGACGGGCCGCCGGTTTCGGTGCTACCCAATCATCTCT
GGGTGCTTGGGCTGGGGCATCTCGGCCAAGCCTTTCTGTGGACGCTGGCGATGAGCCCCTATTCTGACCGGGCAAGCGTG
AAGCTGGTTCTGCAAGACACCGATGTCGTCACCGGCTCGACCGCGAGCACATCGATTCTGACTCGTCCTGAAACCACCGG
CCGCAAGACCCGTACGGTTGCGGCTCTGCTGGAGAATCTCGGCTTCGCGACCTCCATCATCGAGCGTCCGTTCGACGGCG
CCTTTAGCCGCCGCTCAGACGATCCATCGGTTCTGATCTGCGGTGTGGACAATGCGCTGGCACGCACTCAGCTCGAACTC
CCTCGGTTCGAATTGGTGATCGAAGCAGGAATAGGTCGAACGGCGAGCGACTTCAGAGCGGTTCGCCTGCACAGCTTTCC
CTCGCAGCGAGCCGCCGCGGAACTGTGGAAGGCGGGTGCGGCCGCAGGCGTCGCGACCGCGGGAAATATGCCGGGATATC
AGCGCCTGCGCGAAAGCGGCGTCGATGATTGTGGCTTGGCCCTTCTAGCCGGAACAGCGGTAGGCGCGCCGTTTGTCGGG
GGCGTGGCGGGCGCCTTGATGTTCGGTCAAATCCTCAAGCTCCTGCACGGCGAGCGGCCCGATGCGGTAGTGGATCTCGA
CCTGCGAGCCCTCGAAGCCCGGCGGGCGGTGCCCAGTTCCGTACCCTTGGTGCACAATCCCGGATTCCAGCCGTGCGACA
ATTGCTGA

Upstream 100 bases:

>100_bases
GGTGTCGGCGTCTATCGCCATCTCGGTGCCGGCAACTGGATTTCCCTGCCGTCGCCCAAAGCGGGTTGGCGCGGCATCAC
CTTTTGAAGGGTTCGTTTCG

Downstream 100 bases:

>100_bases
TATGGTCCGAAGGACGGGCCGCTATCTAGAAGTGGAGATCCTGACTAAGATGTATGAATCGATGATAAGACCTCCGCAAT
ATTGAAGAAGTTCAAAAAAA

Product: UBA/ThiF-type NAD/FAD binding fold containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALLTFVNIASRFALGGVTVSGIA
DVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSATTPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLA
GSLAAAEIFAMLRDEIGAGCRDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV
KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSDDPSVLICGVDNALARTQLEL
PRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGAAAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVG
GVAGALMFGQILKLLHGERPDAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC

Sequences:

>Translated_455_residues
MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALLTFVNIASRFALGGVTVSGIA
DVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSATTPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLA
GSLAAAEIFAMLRDEIGAGCRDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV
KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSDDPSVLICGVDNALARTQLEL
PRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGAAAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVG
GVAGALMFGQILKLLHGERPDAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC
>Mature_455_residues
MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALLTFVNIASRFALGGVTVSGIA
DVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSATTPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLA
GSLAAAEIFAMLRDEIGAGCRDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV
KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSDDPSVLICGVDNALARTQLEL
PRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGAAAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVG
GVAGALMFGQILKLLHGERPDAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47637; Mature: 47637

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALL
CCCCHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCHHEECCCHHHHHHHHHHHHHH
TFVNIASRFALGGVTVSGIADVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSAT
HHHHHHHHHHHCCEEECCCCCCCEECCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCC
TPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLAGSLAAAEIFAMLRDEIGAGC
CCCCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
RDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV
HHCCCEEECCCCCHHHCCCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEE
KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSD
EEEEEECCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCHHCCCCC
DPSVLICGVDNALARTQLELPRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGA
CCCEEEECCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHEEEECCCCCHHHHHHHHHHCC
AAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVGGVAGALMFGQILKLLHGERP
CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
DAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC
CEEEECHHHHHHHHHCCCCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALL
CCCCHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCHHEECCCHHHHHHHHHHHHHH
TFVNIASRFALGGVTVSGIADVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSAT
HHHHHHHHHHHCCEEECCCCCCCEECCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCC
TPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLAGSLAAAEIFAMLRDEIGAGC
CCCCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
RDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV
HHCCCEEECCCCCHHHCCCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEE
KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSD
EEEEEECCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCHHCCCCC
DPSVLICGVDNALARTQLELPRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGA
CCCEEEECCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHEEEECCCCCHHHHHHHHHHCC
AAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVGGVAGALMFGQILKLLHGERP
CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
DAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC
CEEEECHHHHHHHHHCCCCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA