| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485549
Identifier: 103485549
GI number: 103485549
Start: 55994
End: 57361
Strand: Reverse
Name: 103485549
Synonym: Sala_0051
Alternate gene names: NA
Gene position: 57361-55994 (Counterclockwise)
Preceding gene: 103485550
Following gene: 103485548
Centisome position: 1.71
GC content: 64.25
Gene sequence:
>1368_bases ATGCATCACAGCGACTTCACTGCCTTCCTCGATGGCTTCAATCGGCTGGCCAAACTCGATCTCGACCTTGGCGACGCATC CTGTCCCGAGACCGCAATGGCTCGCCTGCGCGGCTATCGAGCGCACATTGCGGCCGGGCCGGAGGTAACGGAGAGCATCG CTCACCAGATCGCGTTGCTGACATTCGTCAATATCGCATCACGCTTTGCGCTCGGCGGGGTGACGGTCTCCGGGATCGCG GATGTTCCATTGCTCGCACCTTGGCACGGAGACAGCCTGGCATCCGCGGTCGAAATGCTCGGTGGCGCGACCGCAGACTT GGCCGAGGAGACACCCGTCGTACTCTTGGGCAGCGCGACCACCCCGGCGGAGCGCGGCGGCTGTCAAATCACCTTTGCCG GATGGCGAGGCGGTGTCGTTCCGCTCGGCGGTTCCAGGCTGGATGAAAAGGAGACAGTCGCGGCGGCCGCGGTGCTAGCC GGATCTTTGGCCGCCGCGGAAATATTCGCCATGCTGCGGGACGAAATCGGCGCCGGTTGCCGCGACCATGGGCTTTCGAT CTGGCGGCCGGACGGGGATGAGGACTGGCGTTCGCCTGCAAGCGACGGGCCGCCGGTTTCGGTGCTACCCAATCATCTCT GGGTGCTTGGGCTGGGGCATCTCGGCCAAGCCTTTCTGTGGACGCTGGCGATGAGCCCCTATTCTGACCGGGCAAGCGTG AAGCTGGTTCTGCAAGACACCGATGTCGTCACCGGCTCGACCGCGAGCACATCGATTCTGACTCGTCCTGAAACCACCGG CCGCAAGACCCGTACGGTTGCGGCTCTGCTGGAGAATCTCGGCTTCGCGACCTCCATCATCGAGCGTCCGTTCGACGGCG CCTTTAGCCGCCGCTCAGACGATCCATCGGTTCTGATCTGCGGTGTGGACAATGCGCTGGCACGCACTCAGCTCGAACTC CCTCGGTTCGAATTGGTGATCGAAGCAGGAATAGGTCGAACGGCGAGCGACTTCAGAGCGGTTCGCCTGCACAGCTTTCC CTCGCAGCGAGCCGCCGCGGAACTGTGGAAGGCGGGTGCGGCCGCAGGCGTCGCGACCGCGGGAAATATGCCGGGATATC AGCGCCTGCGCGAAAGCGGCGTCGATGATTGTGGCTTGGCCCTTCTAGCCGGAACAGCGGTAGGCGCGCCGTTTGTCGGG GGCGTGGCGGGCGCCTTGATGTTCGGTCAAATCCTCAAGCTCCTGCACGGCGAGCGGCCCGATGCGGTAGTGGATCTCGA CCTGCGAGCCCTCGAAGCCCGGCGGGCGGTGCCCAGTTCCGTACCCTTGGTGCACAATCCCGGATTCCAGCCGTGCGACA ATTGCTGA
Upstream 100 bases:
>100_bases GGTGTCGGCGTCTATCGCCATCTCGGTGCCGGCAACTGGATTTCCCTGCCGTCGCCCAAAGCGGGTTGGCGCGGCATCAC CTTTTGAAGGGTTCGTTTCG
Downstream 100 bases:
>100_bases TATGGTCCGAAGGACGGGCCGCTATCTAGAAGTGGAGATCCTGACTAAGATGTATGAATCGATGATAAGACCTCCGCAAT ATTGAAGAAGTTCAAAAAAA
Product: UBA/ThiF-type NAD/FAD binding fold containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALLTFVNIASRFALGGVTVSGIA DVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSATTPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLA GSLAAAEIFAMLRDEIGAGCRDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSDDPSVLICGVDNALARTQLEL PRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGAAAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVG GVAGALMFGQILKLLHGERPDAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC
Sequences:
>Translated_455_residues MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALLTFVNIASRFALGGVTVSGIA DVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSATTPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLA GSLAAAEIFAMLRDEIGAGCRDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSDDPSVLICGVDNALARTQLEL PRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGAAAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVG GVAGALMFGQILKLLHGERPDAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC >Mature_455_residues MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALLTFVNIASRFALGGVTVSGIA DVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSATTPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLA GSLAAAEIFAMLRDEIGAGCRDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSDDPSVLICGVDNALARTQLEL PRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGAAAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVG GVAGALMFGQILKLLHGERPDAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47637; Mature: 47637
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALL CCCCHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCHHEECCCHHHHHHHHHHHHHH TFVNIASRFALGGVTVSGIADVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSAT HHHHHHHHHHHCCEEECCCCCCCEECCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCC TPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLAGSLAAAEIFAMLRDEIGAGC CCCCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH RDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV HHCCCEEECCCCCHHHCCCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEE KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSD EEEEEECCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCHHCCCCC DPSVLICGVDNALARTQLELPRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGA CCCEEEECCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHEEEECCCCCHHHHHHHHHHCC AAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVGGVAGALMFGQILKLLHGERP CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC DAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC CEEEECHHHHHHHHHCCCCCCCEEECCCCCCCCCC >Mature Secondary Structure MHHSDFTAFLDGFNRLAKLDLDLGDASCPETAMARLRGYRAHIAAGPEVTESIAHQIALL CCCCHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCHHEECCCHHHHHHHHHHHHHH TFVNIASRFALGGVTVSGIADVPLLAPWHGDSLASAVEMLGGATADLAEETPVVLLGSAT HHHHHHHHHHHCCEEECCCCCCCEECCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCC TPAERGGCQITFAGWRGGVVPLGGSRLDEKETVAAAAVLAGSLAAAEIFAMLRDEIGAGC CCCCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH RDHGLSIWRPDGDEDWRSPASDGPPVSVLPNHLWVLGLGHLGQAFLWTLAMSPYSDRASV HHCCCEEECCCCCHHHCCCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEE KLVLQDTDVVTGSTASTSILTRPETTGRKTRTVAALLENLGFATSIIERPFDGAFSRRSD EEEEEECCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCHHCCCCC DPSVLICGVDNALARTQLELPRFELVIEAGIGRTASDFRAVRLHSFPSQRAAAELWKAGA CCCEEEECCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHEEEECCCCCHHHHHHHHHHCC AAGVATAGNMPGYQRLRESGVDDCGLALLAGTAVGAPFVGGVAGALMFGQILKLLHGERP CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC DAVVDLDLRALEARRAVPSSVPLVHNPGFQPCDNC CEEEECHHHHHHHHHCCCCCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA