| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yhaO [H]
Identifier: 103485548
GI number: 103485548
Start: 54644
End: 55894
Strand: Reverse
Name: yhaO [H]
Synonym: Sala_0050
Alternate gene names: 103485548
Gene position: 55894-54644 (Counterclockwise)
Preceding gene: 103485549
Following gene: 103485547
Centisome position: 1.67
GC content: 62.11
Gene sequence:
>1251_bases ATGACAGGAACCTTTACTTTCGTTCACGCGGCCGATGTTCATCTCGACAGCCCGCTTGGCGGATTGGCGAAGCGGGACAA AGCCTTTAGCGGTCTGGCCCTCAACGCGACCCGGCGCGCCCTTGCGAATGTCGTCGATCTGGCCATCGCGGAGGGGGCCG CATTTGTCGTCGTCGCAGGCGACCTCTACGACGGCACCTGGAAGGATCAGTCGACCGGGCAGTTTGCGGTTTCCCAGTTT GCGCGGCTGTCGCGAGCGGGCATTCGCGTCGCCATCGCCTTCGGAAATCATGATGCCGAAAGCCGGATTACCCGCCATTT GACCATGCCGGAAGGCGTTTTCGGATTCTCCAATCGGAAGTGCGAGACCGTCCTGTTCGAGGATCTCGGAGTCGCGCTGC ACGGCCGAAGCTACAAGGATGTAGCGACCCTCGAGAATATCGCAGCTGAATATTGTCCGCCGGTCACCGGGATGTTCAAC TTGGCGGTGCTTCACACCGCGCTTGAAGGGCATCCGGATCATGCGCGCTACGCGCCCTGCTCCGTCGGCGAGCTCGTGGC GTCGGGACATGACTATTGGGCGCTTGGCCATGTCCATGATGCATCAATCCGCTCCGAGCATCCGCACATCGTTTATCCAG GCAATACCCAGGGCCGGAATGTCAGGGAGACCGGCGTCAAGGGTGCCATGGTGGTTCGAGTGGAGGAAGGCGTCGTGCGG TCGGTCGAACACCGCGCGTGTGACGAAGTGCGATGGGCTCGGCCGGAGTTCGACGGGCGACAGGCGAGCGACATGCACGA GCTTCTCTCCGGCATCGGCGGTGTGCTCCAAGAAGCCATCGCAGGCGCGGGCGACCGACCGACGGCGGTACGCCTTCACG TGAAGACCTCTGGCGGCCTCCAAAACAAACTGCTCGCCGATCCGGATTGGTTTAACGCGGAAGTCGGCGCGCGCGCCATG ACCGTGTCGGAGAGTTTGTGGATCGAAAGGGTTAAGGTTGAAAGCAGTGAAGACGCCGCTACTCGGGGGCTTCCGCCTGA GTTGATCGAACTGCTGAATGGCGCATTGGCCGATCCGGATTGTCTGCGCGCGGTGGAGGATGCGGTCGCGCCGCTTGTCG GCAAGATGCCTGCTGGCACGATTGATGCGGATCTTGCACCGCTATTGGCCGCAGCAAGCGCGCGGGATGGTAACTCCCTG CTCGCGGCGGCAAAGCGAGCCGTCGAAGCTTCGCTAAGCGTAGATGCCTGA
Upstream 100 bases:
>100_bases ATATGGTCCGAAGGACGGGCCGCTATCTAGAAGTGGAGATCCTGACTAAGATGTATGAATCGATGATAAGACCTCCGCAA TATTGAAGAAGTTCAAAAAA
Downstream 100 bases:
>100_bases TGCGATTCCAGCTGCTCGATCTGGTCCGCTATGGCGGTTTTGCGGATCGCGTCGTCACGTTCGGGCCGGGGCGGCCGGAT CTTCATCTCGTCATGGGGCC
Product: metallophosphoesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MTGTFTFVHAADVHLDSPLGGLAKRDKAFSGLALNATRRALANVVDLAIAEGAAFVVVAGDLYDGTWKDQSTGQFAVSQF ARLSRAGIRVAIAFGNHDAESRITRHLTMPEGVFGFSNRKCETVLFEDLGVALHGRSYKDVATLENIAAEYCPPVTGMFN LAVLHTALEGHPDHARYAPCSVGELVASGHDYWALGHVHDASIRSEHPHIVYPGNTQGRNVRETGVKGAMVVRVEEGVVR SVEHRACDEVRWARPEFDGRQASDMHELLSGIGGVLQEAIAGAGDRPTAVRLHVKTSGGLQNKLLADPDWFNAEVGARAM TVSESLWIERVKVESSEDAATRGLPPELIELLNGALADPDCLRAVEDAVAPLVGKMPAGTIDADLAPLLAAASARDGNSL LAAAKRAVEASLSVDA
Sequences:
>Translated_416_residues MTGTFTFVHAADVHLDSPLGGLAKRDKAFSGLALNATRRALANVVDLAIAEGAAFVVVAGDLYDGTWKDQSTGQFAVSQF ARLSRAGIRVAIAFGNHDAESRITRHLTMPEGVFGFSNRKCETVLFEDLGVALHGRSYKDVATLENIAAEYCPPVTGMFN LAVLHTALEGHPDHARYAPCSVGELVASGHDYWALGHVHDASIRSEHPHIVYPGNTQGRNVRETGVKGAMVVRVEEGVVR SVEHRACDEVRWARPEFDGRQASDMHELLSGIGGVLQEAIAGAGDRPTAVRLHVKTSGGLQNKLLADPDWFNAEVGARAM TVSESLWIERVKVESSEDAATRGLPPELIELLNGALADPDCLRAVEDAVAPLVGKMPAGTIDADLAPLLAAASARDGNSL LAAAKRAVEASLSVDA >Mature_415_residues TGTFTFVHAADVHLDSPLGGLAKRDKAFSGLALNATRRALANVVDLAIAEGAAFVVVAGDLYDGTWKDQSTGQFAVSQFA RLSRAGIRVAIAFGNHDAESRITRHLTMPEGVFGFSNRKCETVLFEDLGVALHGRSYKDVATLENIAAEYCPPVTGMFNL AVLHTALEGHPDHARYAPCSVGELVASGHDYWALGHVHDASIRSEHPHIVYPGNTQGRNVRETGVKGAMVVRVEEGVVRS VEHRACDEVRWARPEFDGRQASDMHELLSGIGGVLQEAIAGAGDRPTAVRLHVKTSGGLQNKLLADPDWFNAEVGARAMT VSESLWIERVKVESSEDAATRGLPPELIELLNGALADPDCLRAVEDAVAPLVGKMPAGTIDADLAPLLAAASARDGNSLL AAAKRAVEASLSVDA
Specific function: Unknown
COG id: COG0420
COG function: function code L; DNA repair exonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallophosphoesterase superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004843 - InterPro: IPR014576 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: NA
Molecular weight: Translated: 44199; Mature: 44068
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTFTFVHAADVHLDSPLGGLAKRDKAFSGLALNATRRALANVVDLAIAEGAAFVVVAG CCCEEEEEEEECEEECCCCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEC DLYDGTWKDQSTGQFAVSQFARLSRAGIRVAIAFGNHDAESRITRHLTMPEGVFGFSNRK CCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCC CETVLFEDLGVALHGRSYKDVATLENIAAEYCPPVTGMFNLAVLHTALEGHPDHARYAPC CCEEEHHHCCEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCC SVGELVASGHDYWALGHVHDASIRSEHPHIVYPGNTQGRNVRETGVKGAMVVRVEEGVVR CHHHHHHCCCCEEEECCEECCCCCCCCCEEEECCCCCCCCHHHCCCCCEEEEEECCHHHH SVEHRACDEVRWARPEFDGRQASDMHELLSGIGGVLQEAIAGAGDRPTAVRLHVKTSGGL HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC QNKLLADPDWFNAEVGARAMTVSESLWIERVKVESSEDAATRGLPPELIELLNGALADPD CCCCCCCCCCCCCCCCCEEEEEHHHHHHEEEEECCCCCHHHCCCCHHHHHHHCCCCCCHH CLRAVEDAVAPLVGKMPAGTIDADLAPLLAAASARDGNSLLAAAKRAVEASLSVDA HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TGTFTFVHAADVHLDSPLGGLAKRDKAFSGLALNATRRALANVVDLAIAEGAAFVVVAG CCEEEEEEEECEEECCCCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEC DLYDGTWKDQSTGQFAVSQFARLSRAGIRVAIAFGNHDAESRITRHLTMPEGVFGFSNRK CCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCC CETVLFEDLGVALHGRSYKDVATLENIAAEYCPPVTGMFNLAVLHTALEGHPDHARYAPC CCEEEHHHCCEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCC SVGELVASGHDYWALGHVHDASIRSEHPHIVYPGNTQGRNVRETGVKGAMVVRVEEGVVR CHHHHHHCCCCEEEECCEECCCCCCCCCEEEECCCCCCCCHHHCCCCCEEEEEECCHHHH SVEHRACDEVRWARPEFDGRQASDMHELLSGIGGVLQEAIAGAGDRPTAVRLHVKTSGGL HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC QNKLLADPDWFNAEVGARAMTVSESLWIERVKVESSEDAATRGLPPELIELLNGALADPD CCCCCCCCCCCCCCCCCEEEEEHHHHHHEEEEECCCCCHHHCCCCHHHHHHHCCCCCCHH CLRAVEDAVAPLVGKMPAGTIDADLAPLLAAASARDGNSLLAAAKRAVEASLSVDA HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]