| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is ilvE [H]
Identifier: 103485545
GI number: 103485545
Start: 47553
End: 48638
Strand: Direct
Name: ilvE [H]
Synonym: Sala_0047
Alternate gene names: 103485545
Gene position: 47553-48638 (Clockwise)
Preceding gene: 103485543
Following gene: 103485546
Centisome position: 1.42
GC content: 66.21
Gene sequence:
>1086_bases ATGTCCGCTCCCGCCTTCGCCCGTCTGCCCCATCCCAGTCCCGTGGCCGATGACGTACGCGCGGCGGCGATCGCCGATCC CGCGTTCGGGCGGGTGTTCACCGACCATATGGTGTCGATTCGCTATACCGAAGGGCAGGGCTGGCACGACGCACAAGTCA TGCCGCGCGGGCCGCTGACGCTCGATCCGGCGACCGCGGTGCTGCATTATGCACAGGAAATCTTCGAAGGGTTGAAGGCT TACCGGCTCGACGATGGCTCGATGGCGCTGTTCCGCGTCGAGGCCAATGCCGCGCGCTTCAACGCCAGCGCGCGCCGCAT GGCGATGGCCGAGCTGCCCGAGGAGTTGTTCATTGCCGCGGTAAAGGAAGCCGTCGCCGCCGACGCGCACTGGTTCCCGC CGGTCGATGGCGGCGCGCTTTATCTGCGCCCTTTCATGTTTGCGAGCGAGGTGTTCCTGGGCGTCAAGCCCGCGTCCGAA TATCAGTTCCTCGTCATCACCTCGCCCGTCGGCAATTATTTCAAGTCGAGCGCCCCCGCGATCTCGCTCTGGGTGTCGGA GGATTATACCCGCGCCGCGCCGGGCGGGACGGGGGCGGCGAAATGCGGCGGCAATTATGCCGCGAGCCTGATCGCGCAGC GCGAAGCCATCGCCAAGGGTCACGATCAGGTCGTTTTCCTCGACGCCGCCGAGCATCGCTGGATCGAGGAACTGGGCGGC ATGAACATGTTCTTCGTCTTTGATGACGGCAGCCTCGTCACCCCGCCGCTCACCGGCACGATCCTGCCCGGCATCACCCG CGACGCGATCATCACGCTCGCGCATGACGCGGGCCTCACGGTGCGCGAGGAAGCCTATGCGATCGACCAGTGGCAGGCCG ATGCGGAGAGCGGCAGACTAACCGAAAGCTTTGCCTGCGGCACCGCGGCAGTGGTTACGCCGGTCGGCAAGGTGACGCGC GGGGAGAAGAGCTTCACCATCGGCGCGGGTGGTCAAGGCCAGGTCACCGAAATGCTGAAAGCGAGGCTCGTCGATATCCA GCGCGGCCGCGCCGCCGACCCCCATGGCTGGGTGACGCGGATCTGA
Upstream 100 bases:
>100_bases TGAAAGAAAATTGTCATCCGGCATGGTCGCTACCGTTGCGCGCCGCGCCGGTCTTTGGCAAGAGGCGCGCTCCATAAACC GCCAACAACAGGTGTTTTTG
Downstream 100 bases:
>100_bases CGCGCGCCGCCTTGCCATTGATGGCGCGGACGCTATAGACGCGCTCGCACCGGCCGTTGGGGCGTAGCCAAGCGGTAAGG CAGCGGTTTTTGGTACCGCC
Product: branched-chain amino acid aminotransferase
Products: NA
Alternate protein names: BCAT [H]
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MSAPAFARLPHPSPVADDVRAAAIADPAFGRVFTDHMVSIRYTEGQGWHDAQVMPRGPLTLDPATAVLHYAQEIFEGLKA YRLDDGSMALFRVEANAARFNASARRMAMAELPEELFIAAVKEAVAADAHWFPPVDGGALYLRPFMFASEVFLGVKPASE YQFLVITSPVGNYFKSSAPAISLWVSEDYTRAAPGGTGAAKCGGNYAASLIAQREAIAKGHDQVVFLDAAEHRWIEELGG MNMFFVFDDGSLVTPPLTGTILPGITRDAIITLAHDAGLTVREEAYAIDQWQADAESGRLTESFACGTAAVVTPVGKVTR GEKSFTIGAGGQGQVTEMLKARLVDIQRGRAADPHGWVTRI
Sequences:
>Translated_361_residues MSAPAFARLPHPSPVADDVRAAAIADPAFGRVFTDHMVSIRYTEGQGWHDAQVMPRGPLTLDPATAVLHYAQEIFEGLKA YRLDDGSMALFRVEANAARFNASARRMAMAELPEELFIAAVKEAVAADAHWFPPVDGGALYLRPFMFASEVFLGVKPASE YQFLVITSPVGNYFKSSAPAISLWVSEDYTRAAPGGTGAAKCGGNYAASLIAQREAIAKGHDQVVFLDAAEHRWIEELGG MNMFFVFDDGSLVTPPLTGTILPGITRDAIITLAHDAGLTVREEAYAIDQWQADAESGRLTESFACGTAAVVTPVGKVTR GEKSFTIGAGGQGQVTEMLKARLVDIQRGRAADPHGWVTRI >Mature_360_residues SAPAFARLPHPSPVADDVRAAAIADPAFGRVFTDHMVSIRYTEGQGWHDAQVMPRGPLTLDPATAVLHYAQEIFEGLKAY RLDDGSMALFRVEANAARFNASARRMAMAELPEELFIAAVKEAVAADAHWFPPVDGGALYLRPFMFASEVFLGVKPASEY QFLVITSPVGNYFKSSAPAISLWVSEDYTRAAPGGTGAAKCGGNYAASLIAQREAIAKGHDQVVFLDAAEHRWIEELGGM NMFFVFDDGSLVTPPLTGTILPGITRDAIITLAHDAGLTVREEAYAIDQWQADAESGRLTESFACGTAAVVTPVGKVTRG EKSFTIGAGGQGQVTEMLKARLVDIQRGRAADPHGWVTRI
Specific function: Acts on leucine, isoleucine and valine [H]
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI38176287, Length=330, Percent_Identity=39.0909090909091, Blast_Score=229, Evalue=3e-60, Organism=Homo sapiens, GI296010904, Length=330, Percent_Identity=39.0909090909091, Blast_Score=229, Evalue=4e-60, Organism=Homo sapiens, GI296010906, Length=330, Percent_Identity=39.0909090909091, Blast_Score=229, Evalue=4e-60, Organism=Homo sapiens, GI50658084, Length=338, Percent_Identity=34.3195266272189, Blast_Score=202, Evalue=4e-52, Organism=Homo sapiens, GI296010902, Length=330, Percent_Identity=34.8484848484849, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI296010900, Length=330, Percent_Identity=34.8484848484849, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI258614015, Length=293, Percent_Identity=33.4470989761092, Blast_Score=162, Evalue=3e-40, Organism=Escherichia coli, GI48994963, Length=322, Percent_Identity=33.2298136645963, Blast_Score=130, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17568601, Length=301, Percent_Identity=38.5382059800665, Blast_Score=211, Evalue=4e-55, Organism=Caenorhabditis elegans, GI17565728, Length=342, Percent_Identity=35.3801169590643, Blast_Score=186, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6322002, Length=361, Percent_Identity=38.2271468144044, Blast_Score=235, Evalue=8e-63, Organism=Saccharomyces cerevisiae, GI6322608, Length=305, Percent_Identity=37.7049180327869, Blast_Score=214, Evalue=1e-56, Organism=Drosophila melanogaster, GI24641779, Length=334, Percent_Identity=40.7185628742515, Blast_Score=238, Evalue=7e-63,
Paralogues:
None
Copy number: 2342 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 11,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001544 - InterPro: IPR018300 - InterPro: IPR005786 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =2.6.1.42 [H]
Molecular weight: Translated: 38770; Mature: 38639
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00770 AA_TRANSFER_CLASS_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPAFARLPHPSPVADDVRAAAIADPAFGRVFTDHMVSIRYTEGQGWHDAQVMPRGPLT CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCEEEEEEECCCCCCCCEECCCCCCE LDPATAVLHYAQEIFEGLKAYRLDDGSMALFRVEANAARFNASARRMAMAELPEELFIAA ECHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCHHHCCHHHHHHHHHHCCHHHHHHH VKEAVAADAHWFPPVDGGALYLRPFMFASEVFLGVKPASEYQFLVITSPVGNYFKSSAPA HHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHEECCCCCCEEEEEEECCCCHHHHCCCCE ISLWVSEDYTRAAPGGTGAAKCGGNYAASLIAQREAIAKGHDQVVFLDAAEHRWIEELGG EEEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCC MNMFFVFDDGSLVTPPLTGTILPGITRDAIITLAHDAGLTVREEAYAIDQWQADAESGRL CEEEEEECCCCEECCCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCCCCCCCC TESFACGTAAVVTPVGKVTRGEKSFTIGAGGQGQVTEMLKARLVDIQRGRAADPHGWVTR CHHHCCCCCHHHCCCHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEC I C >Mature Secondary Structure SAPAFARLPHPSPVADDVRAAAIADPAFGRVFTDHMVSIRYTEGQGWHDAQVMPRGPLT CCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCEEEEEEECCCCCCCCEECCCCCCE LDPATAVLHYAQEIFEGLKAYRLDDGSMALFRVEANAARFNASARRMAMAELPEELFIAA ECHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCHHHCCHHHHHHHHHHCCHHHHHHH VKEAVAADAHWFPPVDGGALYLRPFMFASEVFLGVKPASEYQFLVITSPVGNYFKSSAPA HHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHEECCCCCCEEEEEEECCCCHHHHCCCCE ISLWVSEDYTRAAPGGTGAAKCGGNYAASLIAQREAIAKGHDQVVFLDAAEHRWIEELGG EEEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCC MNMFFVFDDGSLVTPPLTGTILPGITRDAIITLAHDAGLTVREEAYAIDQWQADAESGRL CEEEEEECCCCEECCCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCCCCCCCC TESFACGTAAVVTPVGKVTRGEKSFTIGAGGQGQVTEMLKARLVDIQRGRAADPHGWVTR CHHHCCCCCHHHCCCHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEC I C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]