Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485546

Identifier: 103485546

GI number: 103485546

Start: 48884

End: 50962

Strand: Direct

Name: 103485546

Synonym: Sala_0048

Alternate gene names: NA

Gene position: 48884-50962 (Clockwise)

Preceding gene: 103485545

Following gene: 103485556

Centisome position: 1.46

GC content: 57.38

Gene sequence:

>2079_bases
ATGCCAGCAATCGAAAATGTGAACCGTCGCGGGGCCACCTACTGGTGGCGTCGCCGGGTGCGCTTCGTTGGACGGCTTGA
ACGTCCTATAACCATCGTAACAACGGTCAGCCTTTTGACGAAGGACCAGTCGGTCGCGCGACGGCGCGCGGTCGCGATGA
CCAGCCGAAGCGAGGTTGTGCGAATGAGCTTATACGAACGGATCGAGCAGGAAGGACTGACCAGCGAGCAGGTGAACCAT
CTCTTTCGAGAGGAGATGGTGCGGTATCGCAACATGCTGGCGCATCAGTTGGCGGTGATCGAGAAGGACGGTGAGGGCAA
TGTCACCGCTCGCTTCCACCAGATGCTCTCGATCTATGCAGCGTTTAACGGCGATTTCATCGCAAATGGCTTCGACGACT
ATATGGGCATCGATTACATCGGGTCATTCGACAAGCGCTTTCCGTCGCTGGACGAAGAGGCCCGCGCCAATCTTTATGCG
ATGCTTTCCCAAGCCGGCGATGTTCCCGGCAATTTGCTGAATGAGGCAAAGGCATTGCTGGAGCGGCTCGGCATCGAGCC
AGCGGCTGACCGAATCGAAATTGCCCGGCAGGTCATGTGTGGGGCACGGTTGACGGCCGCGGCAACCTACGACAGCCCCG
AGGTTCGGGCGATCGAACACAGCTTGGCGCTGATGAACGCGCTCGGGCGAGCGCCTCTGCAGACTTCGATGCCTCCCCCG
ATCTCCGCCCCTGCGCCTCCAAACGCGTGGAACGCCAGCACCATTGTGCCTGCGTCAGCGTCGACACTCACCGATGTGCA
GACCCATTATGCCACCCTTAGCCCGGTGCAGGCAGTAGAAAAATATATGGAGCTGAAACCAAAGGCGCGCGGACGGGAAG
ATGCGCCGGTCCTGGCCGAGGGTGCGAACCCCAAAAAGCGCAAGTCGCAGCCGAAGGTCTGGGGCGCCAGCCAGAAGCGC
CAGTTCAAGGCCGCGCCCTTTCTGTTCGGCAAGTCAAATAATGGCAAGGCCATGGCAGCAACATGCCAGGAAGACCTGAA
CCAGTTTTACGACCTGTTGAACCGGTTACCGTCGTCGCATCATAAGTCGCCTCGACACGAAGCGATGTCGCTGGAGGAAA
TTTGCAGCGAGGCGCTCGATCGTCTTACTGAAGAAGAGGAGCGCGGCGAAGAAATCTCGTTCGCGATTGGCCTCGACGTA
GGAACCATCAATCGTCATTTCGCCAACCTCAAGAGATTGTGTGCGTGGCTTGCGACGAAAACGCCAATGGCGCCTCTCGA
TTTTTCAGATTTTATCCTCGATGAGGACGACAGGGACGAGCGCGACGAGCGCGACCCCTATACGATTGCGCAGGGTGAAG
AATTGTTTCGTCTCGGCATCTGGACCGGCGGTACGGGCGTCGATTTGCCTCAGCGTTTGTCCGTGACGCCGGGAGGCTCG
ATTTGGCACGACGCAGCCTATTGGGTCATGCCGCTGGTCTGGTATTCAGGTATGCGGCGCGAGGAAGCTTGTAAGCTTTT
GGTCGATGATATCGGCGAAGAAGACGGTATCTTTTTTGTCAACATCAGGAAAACTTCTGCGGGCGGCGTCAAGAACGCGA
CCAGCGTTCGTAAGATTCCTGTTTGCGAAGAGCTGCGTCGCTTGGGCTTCATGCATTATGTCCAAGCCATGAAGGAAGCT
GGCGAGCAGTACCTCTTTCCAGAAATCCAACCCGGTCGCACAGGGCGTGCGCTGGGAGATGTATTTTTCAAAAATATATG
GCTTCACATTAAGCCACGTCTGAAACTCGTAAAGCCGGGACAGGCGGTTCACAGCGGTCGGCATATGGTCAGCACTGAAT
TGAAGATGTTGCAGACATTCGAAGAATTTCGGTCGGATCTTCTCGGTCAGAAGCATGGCGGCGAAAATGCCAACCGATAC
GCGAGCGCCACACGCCTCCAGATCCTGCTTGATGTCGTGAACCAGATACCCAAAGTGACCGCCCATCTGCAAGATACCGT
AGAAATCCGGTTGCTACCCGTTTGCATGCGCGGCGCGCGGCCAACTCGCGAGAGCGCCGGGCGGCGCAAGCGCGGTTGA

Upstream 100 bases:

>100_bases
CTCAGCCAAGGGACGGAAAACCCCAGGTTTCTCCCTTAACTGAGCAAGGCCGACCATCGCAGTGGCATCAATTGCTACCA
GTGGGTGGAGCCAGTGCCTG

Downstream 100 bases:

>100_bases
CACCATGTCGGACTAAATATCGAATAGTCGCTGGGTGGCTAAGCCATCGTTTACGGCTGCTATGCGCCCGGATTGCGCCA
TTTAGCGACTCCTTGGGCGA

Product: phage integrase

Products: NA

Alternate protein names: Phage Integrase Family Protein; Integrase; Phage Integrase; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 692; Mature: 691

Protein sequence:

>692_residues
MPAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVVRMSLYERIEQEGLTSEQVNH
LFREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYAAFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYA
MLSQAGDVPGNLLNEAKALLERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPP
ISAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAEGANPKKRKSQPKVWGASQKR
QFKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSHHKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDV
GTINRHFANLKRLCAWLATKTPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGS
IWHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIPVCEELRRLGFMHYVQAMKEA
GEQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPGQAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRY
ASATRLQILLDVVNQIPKVTAHLQDTVEIRLLPVCMRGARPTRESAGRRKRG

Sequences:

>Translated_692_residues
MPAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVVRMSLYERIEQEGLTSEQVNH
LFREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYAAFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYA
MLSQAGDVPGNLLNEAKALLERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPP
ISAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAEGANPKKRKSQPKVWGASQKR
QFKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSHHKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDV
GTINRHFANLKRLCAWLATKTPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGS
IWHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIPVCEELRRLGFMHYVQAMKEA
GEQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPGQAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRY
ASATRLQILLDVVNQIPKVTAHLQDTVEIRLLPVCMRGARPTRESAGRRKRG
>Mature_691_residues
PAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVVRMSLYERIEQEGLTSEQVNHL
FREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYAAFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYAM
LSQAGDVPGNLLNEAKALLERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPPI
SAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAEGANPKKRKSQPKVWGASQKRQ
FKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSHHKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDVG
TINRHFANLKRLCAWLATKTPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGSI
WHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIPVCEELRRLGFMHYVQAMKEAG
EQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPGQAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRYA
SATRLQILLDVVNQIPKVTAHLQDTVEIRLLPVCMRGARPTRESAGRRKRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77790; Mature: 77659

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVV
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHH
RMSLYERIEQEGLTSEQVNHLFREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHH
AFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYAMLSQAGDVPGNLLNEAKALL
HHCCCEEECCHHHHCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPP
HHHCCCCCHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
ISAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAE
CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEC
GANPKKRKSQPKVWGASQKRQFKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSH
CCCCHHHCCCCCCCCCCHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCC
HKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDVGTINRHFANLKRLCAWLATK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCC
TPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGS
CCCCCCCHHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCEECCCCCC
IWHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
VCEELRRLGFMHYVQAMKEAGEQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPG
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHEEEECCCEEEECCC
QAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRYASATRLQILLDVVNQIPKVT
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AHLQDTVEIRLLPVCMRGARPTRESAGRRKRG
HHHHHHHHEEEEHHHHCCCCCCHHHCCCCCCC
>Mature Secondary Structure 
PAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHH
RMSLYERIEQEGLTSEQVNHLFREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHH
AFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYAMLSQAGDVPGNLLNEAKALL
HHCCCEEECCHHHHCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPP
HHHCCCCCHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
ISAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAE
CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEC
GANPKKRKSQPKVWGASQKRQFKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSH
CCCCHHHCCCCCCCCCCHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCC
HKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDVGTINRHFANLKRLCAWLATK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCC
TPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGS
CCCCCCCHHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCEECCCCCC
IWHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
VCEELRRLGFMHYVQAMKEAGEQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPG
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHEEEECCCEEEECCC
QAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRYASATRLQILLDVVNQIPKVT
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AHLQDTVEIRLLPVCMRGARPTRESAGRRKRG
HHHHHHHHEEEEHHHHCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA