| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485546
Identifier: 103485546
GI number: 103485546
Start: 48884
End: 50962
Strand: Direct
Name: 103485546
Synonym: Sala_0048
Alternate gene names: NA
Gene position: 48884-50962 (Clockwise)
Preceding gene: 103485545
Following gene: 103485556
Centisome position: 1.46
GC content: 57.38
Gene sequence:
>2079_bases ATGCCAGCAATCGAAAATGTGAACCGTCGCGGGGCCACCTACTGGTGGCGTCGCCGGGTGCGCTTCGTTGGACGGCTTGA ACGTCCTATAACCATCGTAACAACGGTCAGCCTTTTGACGAAGGACCAGTCGGTCGCGCGACGGCGCGCGGTCGCGATGA CCAGCCGAAGCGAGGTTGTGCGAATGAGCTTATACGAACGGATCGAGCAGGAAGGACTGACCAGCGAGCAGGTGAACCAT CTCTTTCGAGAGGAGATGGTGCGGTATCGCAACATGCTGGCGCATCAGTTGGCGGTGATCGAGAAGGACGGTGAGGGCAA TGTCACCGCTCGCTTCCACCAGATGCTCTCGATCTATGCAGCGTTTAACGGCGATTTCATCGCAAATGGCTTCGACGACT ATATGGGCATCGATTACATCGGGTCATTCGACAAGCGCTTTCCGTCGCTGGACGAAGAGGCCCGCGCCAATCTTTATGCG ATGCTTTCCCAAGCCGGCGATGTTCCCGGCAATTTGCTGAATGAGGCAAAGGCATTGCTGGAGCGGCTCGGCATCGAGCC AGCGGCTGACCGAATCGAAATTGCCCGGCAGGTCATGTGTGGGGCACGGTTGACGGCCGCGGCAACCTACGACAGCCCCG AGGTTCGGGCGATCGAACACAGCTTGGCGCTGATGAACGCGCTCGGGCGAGCGCCTCTGCAGACTTCGATGCCTCCCCCG ATCTCCGCCCCTGCGCCTCCAAACGCGTGGAACGCCAGCACCATTGTGCCTGCGTCAGCGTCGACACTCACCGATGTGCA GACCCATTATGCCACCCTTAGCCCGGTGCAGGCAGTAGAAAAATATATGGAGCTGAAACCAAAGGCGCGCGGACGGGAAG ATGCGCCGGTCCTGGCCGAGGGTGCGAACCCCAAAAAGCGCAAGTCGCAGCCGAAGGTCTGGGGCGCCAGCCAGAAGCGC CAGTTCAAGGCCGCGCCCTTTCTGTTCGGCAAGTCAAATAATGGCAAGGCCATGGCAGCAACATGCCAGGAAGACCTGAA CCAGTTTTACGACCTGTTGAACCGGTTACCGTCGTCGCATCATAAGTCGCCTCGACACGAAGCGATGTCGCTGGAGGAAA TTTGCAGCGAGGCGCTCGATCGTCTTACTGAAGAAGAGGAGCGCGGCGAAGAAATCTCGTTCGCGATTGGCCTCGACGTA GGAACCATCAATCGTCATTTCGCCAACCTCAAGAGATTGTGTGCGTGGCTTGCGACGAAAACGCCAATGGCGCCTCTCGA TTTTTCAGATTTTATCCTCGATGAGGACGACAGGGACGAGCGCGACGAGCGCGACCCCTATACGATTGCGCAGGGTGAAG AATTGTTTCGTCTCGGCATCTGGACCGGCGGTACGGGCGTCGATTTGCCTCAGCGTTTGTCCGTGACGCCGGGAGGCTCG ATTTGGCACGACGCAGCCTATTGGGTCATGCCGCTGGTCTGGTATTCAGGTATGCGGCGCGAGGAAGCTTGTAAGCTTTT GGTCGATGATATCGGCGAAGAAGACGGTATCTTTTTTGTCAACATCAGGAAAACTTCTGCGGGCGGCGTCAAGAACGCGA CCAGCGTTCGTAAGATTCCTGTTTGCGAAGAGCTGCGTCGCTTGGGCTTCATGCATTATGTCCAAGCCATGAAGGAAGCT GGCGAGCAGTACCTCTTTCCAGAAATCCAACCCGGTCGCACAGGGCGTGCGCTGGGAGATGTATTTTTCAAAAATATATG GCTTCACATTAAGCCACGTCTGAAACTCGTAAAGCCGGGACAGGCGGTTCACAGCGGTCGGCATATGGTCAGCACTGAAT TGAAGATGTTGCAGACATTCGAAGAATTTCGGTCGGATCTTCTCGGTCAGAAGCATGGCGGCGAAAATGCCAACCGATAC GCGAGCGCCACACGCCTCCAGATCCTGCTTGATGTCGTGAACCAGATACCCAAAGTGACCGCCCATCTGCAAGATACCGT AGAAATCCGGTTGCTACCCGTTTGCATGCGCGGCGCGCGGCCAACTCGCGAGAGCGCCGGGCGGCGCAAGCGCGGTTGA
Upstream 100 bases:
>100_bases CTCAGCCAAGGGACGGAAAACCCCAGGTTTCTCCCTTAACTGAGCAAGGCCGACCATCGCAGTGGCATCAATTGCTACCA GTGGGTGGAGCCAGTGCCTG
Downstream 100 bases:
>100_bases CACCATGTCGGACTAAATATCGAATAGTCGCTGGGTGGCTAAGCCATCGTTTACGGCTGCTATGCGCCCGGATTGCGCCA TTTAGCGACTCCTTGGGCGA
Product: phage integrase
Products: NA
Alternate protein names: Phage Integrase Family Protein; Integrase; Phage Integrase; Phage Integrase Family Site Specific Recombinase
Number of amino acids: Translated: 692; Mature: 691
Protein sequence:
>692_residues MPAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVVRMSLYERIEQEGLTSEQVNH LFREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYAAFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYA MLSQAGDVPGNLLNEAKALLERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPP ISAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAEGANPKKRKSQPKVWGASQKR QFKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSHHKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDV GTINRHFANLKRLCAWLATKTPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGS IWHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIPVCEELRRLGFMHYVQAMKEA GEQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPGQAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRY ASATRLQILLDVVNQIPKVTAHLQDTVEIRLLPVCMRGARPTRESAGRRKRG
Sequences:
>Translated_692_residues MPAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVVRMSLYERIEQEGLTSEQVNH LFREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYAAFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYA MLSQAGDVPGNLLNEAKALLERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPP ISAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAEGANPKKRKSQPKVWGASQKR QFKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSHHKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDV GTINRHFANLKRLCAWLATKTPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGS IWHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIPVCEELRRLGFMHYVQAMKEA GEQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPGQAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRY ASATRLQILLDVVNQIPKVTAHLQDTVEIRLLPVCMRGARPTRESAGRRKRG >Mature_691_residues PAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVVRMSLYERIEQEGLTSEQVNHL FREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYAAFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYAM LSQAGDVPGNLLNEAKALLERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPPI SAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAEGANPKKRKSQPKVWGASQKRQ FKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSHHKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDVG TINRHFANLKRLCAWLATKTPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGSI WHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIPVCEELRRLGFMHYVQAMKEAG EQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPGQAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRYA SATRLQILLDVVNQIPKVTAHLQDTVEIRLLPVCMRGARPTRESAGRRKRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77790; Mature: 77659
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVV CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHH RMSLYERIEQEGLTSEQVNHLFREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHH AFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYAMLSQAGDVPGNLLNEAKALL HHCCCEEECCHHHHCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPP HHHCCCCCHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC ISAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAE CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEC GANPKKRKSQPKVWGASQKRQFKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSH CCCCHHHCCCCCCCCCCHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCC HKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDVGTINRHFANLKRLCAWLATK CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCC TPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGS CCCCCCCHHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCEECCCCCC IWHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCC VCEELRRLGFMHYVQAMKEAGEQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPG HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHEEEECCCEEEECCC QAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRYASATRLQILLDVVNQIPKVT HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AHLQDTVEIRLLPVCMRGARPTRESAGRRKRG HHHHHHHHEEEEHHHHCCCCCCHHHCCCCCCC >Mature Secondary Structure PAIENVNRRGATYWWRRRVRFVGRLERPITIVTTVSLLTKDQSVARRRAVAMTSRSEVV CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHH RMSLYERIEQEGLTSEQVNHLFREEMVRYRNMLAHQLAVIEKDGEGNVTARFHQMLSIYA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHH AFNGDFIANGFDDYMGIDYIGSFDKRFPSLDEEARANLYAMLSQAGDVPGNLLNEAKALL HHCCCEEECCHHHHCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ERLGIEPAADRIEIARQVMCGARLTAAATYDSPEVRAIEHSLALMNALGRAPLQTSMPPP HHHCCCCCHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC ISAPAPPNAWNASTIVPASASTLTDVQTHYATLSPVQAVEKYMELKPKARGREDAPVLAE CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEC GANPKKRKSQPKVWGASQKRQFKAAPFLFGKSNNGKAMAATCQEDLNQFYDLLNRLPSSH CCCCHHHCCCCCCCCCCHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCC HKSPRHEAMSLEEICSEALDRLTEEEERGEEISFAIGLDVGTINRHFANLKRLCAWLATK CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCC TPMAPLDFSDFILDEDDRDERDERDPYTIAQGEELFRLGIWTGGTGVDLPQRLSVTPGGS CCCCCCCHHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCEECCCCCC IWHDAAYWVMPLVWYSGMRREEACKLLVDDIGEEDGIFFVNIRKTSAGGVKNATSVRKIP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCC VCEELRRLGFMHYVQAMKEAGEQYLFPEIQPGRTGRALGDVFFKNIWLHIKPRLKLVKPG HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHEEEECCCEEEECCC QAVHSGRHMVSTELKMLQTFEEFRSDLLGQKHGGENANRYASATRLQILLDVVNQIPKVT HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AHLQDTVEIRLLPVCMRGARPTRESAGRRKRG HHHHHHHHEEEEHHHHCCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA