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The map label for this gene is yqxC [H]

Identifier: 103485540

GI number: 103485540

Start: 41406

End: 42146

Strand: Reverse

Name: yqxC [H]

Synonym: Sala_0042

Alternate gene names: 103485540

Gene position: 42146-41406 (Counterclockwise)

Preceding gene: 103485541

Following gene: 103485539

Centisome position: 1.26

GC content: 67.21

Gene sequence:

>741_bases
ATGGCGAAGGTCCGCGCCGACCAGCTGCTCGTTGACCGCGGCCTGGCCGAAAGCCGGACGCGCGCGCAGGCGCTGATCCT
CGCGGGACTGGCCTTCGTCGGCGACCGCAAGATCGACAAGGCGGGGCAGCAGATCGCCGCCGATGCCGCGCTGAGCGTGA
AGGGCCGCGACCATCCGTGGGTGTCGCGCGGCGGGATCAAGCTCGACCATGCCCTCTCCCATCTGGGCTGGGACGTCACC
GGCGCGGTCGCGATCGACGTCGGATCATCGACCGGCGGTTTCACCGACGTGCTGCTGAGCCGCGGCGCGGCGCGCGTTTA
TGCGGTCGATTCGGGCACCAACCAGCTCGCGTGGAAATTGCGGCAGGACGATCGCGTCATCGTCCACGAACAGACGAGCG
CGCGCATCCTGACCGCGAAGCATATTCCGGAACCCGTCAGCCTTGTCGTCTGCGACGCCAGCTTCATCGCGCTGTCGAAG
GTGCTGCCGGTGCCGATGTCTTTCACCGGGCCCGGAGCGCGTCTCGTCGCGCTGATCAAGCCGCAGTTCGAGGCCGAACG
CCATGAGGTCGGCAAGAAAGGCGTCGTGCGCGACGTTGCCGTTCATGCGCGTGTTTGCGCCGACGTGCGCGCTTGGCTTA
CCGGCAAAGGCTGGGACGTGGTCGATCTGGTCGAAAGCCCGATCACCGGCCCCGAAGGCAATGTCGAGTTCCTGATCGCG
GCGATCAAGCGAGCGGGTTGA

Upstream 100 bases:

>100_bases
ATTGCGAGCGCAGCGAAGCAATCTCCCGCTATCGCCCTGCCTTGCCGATAGCTGGAGATTGCTTCGTCGCTTCGCTCCTC
GCAATGACGGGAGAAATGTG

Downstream 100 bases:

>100_bases
CGCTGCGCCGCACAATCGCGAGACACATGCAACGGATTCGCCGGTGGGGGATATTGCCGACATGACCGAAATCGCAACGC
CGGGCCAGCTTCGCATGTCC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MAKVRADQLLVDRGLAESRTRAQALILAGLAFVGDRKIDKAGQQIAADAALSVKGRDHPWVSRGGIKLDHALSHLGWDVT
GAVAIDVGSSTGGFTDVLLSRGAARVYAVDSGTNQLAWKLRQDDRVIVHEQTSARILTAKHIPEPVSLVVCDASFIALSK
VLPVPMSFTGPGARLVALIKPQFEAERHEVGKKGVVRDVAVHARVCADVRAWLTGKGWDVVDLVESPITGPEGNVEFLIA
AIKRAG

Sequences:

>Translated_246_residues
MAKVRADQLLVDRGLAESRTRAQALILAGLAFVGDRKIDKAGQQIAADAALSVKGRDHPWVSRGGIKLDHALSHLGWDVT
GAVAIDVGSSTGGFTDVLLSRGAARVYAVDSGTNQLAWKLRQDDRVIVHEQTSARILTAKHIPEPVSLVVCDASFIALSK
VLPVPMSFTGPGARLVALIKPQFEAERHEVGKKGVVRDVAVHARVCADVRAWLTGKGWDVVDLVESPITGPEGNVEFLIA
AIKRAG
>Mature_245_residues
AKVRADQLLVDRGLAESRTRAQALILAGLAFVGDRKIDKAGQQIAADAALSVKGRDHPWVSRGGIKLDHALSHLGWDVTG
AVAIDVGSSTGGFTDVLLSRGAARVYAVDSGTNQLAWKLRQDDRVIVHEQTSARILTAKHIPEPVSLVVCDASFIALSKV
LPVPMSFTGPGARLVALIKPQFEAERHEVGKKGVVRDVAVHARVCADVRAWLTGKGWDVVDLVESPITGPEGNVEFLIAA
IKRAG

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26198; Mature: 26067

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKVRADQLLVDRGLAESRTRAQALILAGLAFVGDRKIDKAGQQIAADAALSVKGRDHPW
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCC
VSRGGIKLDHALSHLGWDVTGAVAIDVGSSTGGFTDVLLSRGAARVYAVDSGTNQLAWKL
CCCCCEEHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCEEEEEE
RQDDRVIVHEQTSARILTAKHIPEPVSLVVCDASFIALSKVLPVPMSFTGPGARLVALIK
CCCCEEEEEECCCCEEEEECCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCEEEEEEC
PQFEAERHEVGKKGVVRDVAVHARVCADVRAWLTGKGWDVVDLVESPITGPEGNVEFLIA
CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHEE
AIKRAG
EHHHCC
>Mature Secondary Structure 
AKVRADQLLVDRGLAESRTRAQALILAGLAFVGDRKIDKAGQQIAADAALSVKGRDHPW
CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCC
VSRGGIKLDHALSHLGWDVTGAVAIDVGSSTGGFTDVLLSRGAARVYAVDSGTNQLAWKL
CCCCCEEHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCEEEEEE
RQDDRVIVHEQTSARILTAKHIPEPVSLVVCDASFIALSKVLPVPMSFTGPGARLVALIK
CCCCEEEEEECCCCEEEEECCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCEEEEEEC
PQFEAERHEVGKKGVVRDVAVHARVCADVRAWLTGKGWDVVDLVESPITGPEGNVEFLIA
CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHEE
AIKRAG
EHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]