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The map label for this gene is yebA [H]

Identifier: 103485523

GI number: 103485523

Start: 19249

End: 20457

Strand: Reverse

Name: yebA [H]

Synonym: Sala_0025

Alternate gene names: 103485523

Gene position: 20457-19249 (Counterclockwise)

Preceding gene: 103485525

Following gene: 103485522

Centisome position: 0.61

GC content: 67.41

Gene sequence:

>1209_bases
TTGTCGTCGAAACCAACGGGCCTGCGCGATGTGCGCCAGCGCTTTAACGCGCTGTTTCAGGACCATGAAATCTTCGTTCG
CACGCACGGCCACGTCCGTTTCTTGCGTGTCAGCGCCCTCTGGCAGAAACGCGTCGCGCTGATCGCCGGGCTGGTGCTGC
TCGCCTGGGCGGGCGCAACGCTTGCCGTGCTCGTCAACCAGCTGCTCACCGCCGACGAACGCGCGGCGGTTGCGGCGCAG
AAAGCCGCCGCCGCCGCGTCCGAGGCGCGCATCGCCAAATATCGCGACCGCGTCGCCGAAACCGCCGCCGATCTCGAAGA
GCGACAGGCGCTGCTTGAAAGCGTCGCCGAAAGTCATTTCGGCATCGATCCGGCCGACATGGCCACCGCCGCCCAAAAAA
CGCATACGTCGGACGCCGCGCCCGCCGAACCCGTCAAGACGAGCGCGATCGACCCGAACCTGCCGCCCGAAGCACAAGTG
CTGGCGCGGCTCGCAGCGCGGCAGGAGGCCTTTGCCGCACGCCTGCTCGGCGCCGTCAAGGACCGTGTCGCAAAAGCCGA
AACCGCGGTTGCAGCTCTTGGCCTCAACCCCGACACGCTGGTGCGCAACGCCGCGGCCGGTCGCGGCGGTCCCTTCATTC
CCTTTCGTGGCCGCGGGGGTCAGGCCAAGGCGCTCGGCGCCAGCTTCGCCGCGCTCGATGGTGCGCTGTTCCGCATGGAA
GTTCTCGAACGCACGCTCGTCGCGGTGCCGTCGGGCAATCCCGCCAATGTTCTGATGATGTCGTCGGGCTTCGGCTATCG
CCGCGACCCCTTCACCGGCGCCGGCGCGATGCACGCGGGCGTAGACTTCCGCGGCCCGATCGGCACGCCGATCCTTGCCG
CCGCGCCGGGCCGCGTCAGCTTTGTCGGCGTCAAGTCGGGCTATGGCAATGTCGTCGAAGTCGATCATGGTCAGGGCATC
ATGACGCGCTATGCCCACTTGTCGGGGTTCACGACCAGGGCGGGGGTCAAGGTCGCCGCGGGGCAGCAGATCGCCAAGAT
GGGTTCGACCGGCCGGTCGACCGGCAGCCACCTGCATTTCGAAGTCCGTTTGAACGGCGTCGCGGTCAATCCGCGCCGCT
TCCTGGAGGCCAAAGCCGATGTTCTCGAAGTCAAAAACGACGCACGACAGCGAGTCGTCTCCGTCGCTGCCGCCCGCGGT
GACCGCTAA

Upstream 100 bases:

>100_bases
CGACTCGGCGCCCAAAGATTCGCCTGGGTCCGTTCGGCCTGTTAAGGCGCGCATCAATCGGGGCGGAGGGCTCCAAAAAC
AAACAAGATGGGGTCGCCAC

Downstream 100 bases:

>100_bases
GATGGCGACGGGCGCGCGCCACACGACCTTCTCGATCCTGGGGTCGGACGTCGTCGTCACCGGTAATGTGGCGGCAAGCG
TCGATCTGCACGTCGACGGC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MSSKPTGLRDVRQRFNALFQDHEIFVRTHGHVRFLRVSALWQKRVALIAGLVLLAWAGATLAVLVNQLLTADERAAVAAQ
KAAAAASEARIAKYRDRVAETAADLEERQALLESVAESHFGIDPADMATAAQKTHTSDAAPAEPVKTSAIDPNLPPEAQV
LARLAARQEAFAARLLGAVKDRVAKAETAVAALGLNPDTLVRNAAAGRGGPFIPFRGRGGQAKALGASFAALDGALFRME
VLERTLVAVPSGNPANVLMMSSGFGYRRDPFTGAGAMHAGVDFRGPIGTPILAAAPGRVSFVGVKSGYGNVVEVDHGQGI
MTRYAHLSGFTTRAGVKVAAGQQIAKMGSTGRSTGSHLHFEVRLNGVAVNPRRFLEAKADVLEVKNDARQRVVSVAAARG
DR

Sequences:

>Translated_402_residues
MSSKPTGLRDVRQRFNALFQDHEIFVRTHGHVRFLRVSALWQKRVALIAGLVLLAWAGATLAVLVNQLLTADERAAVAAQ
KAAAAASEARIAKYRDRVAETAADLEERQALLESVAESHFGIDPADMATAAQKTHTSDAAPAEPVKTSAIDPNLPPEAQV
LARLAARQEAFAARLLGAVKDRVAKAETAVAALGLNPDTLVRNAAAGRGGPFIPFRGRGGQAKALGASFAALDGALFRME
VLERTLVAVPSGNPANVLMMSSGFGYRRDPFTGAGAMHAGVDFRGPIGTPILAAAPGRVSFVGVKSGYGNVVEVDHGQGI
MTRYAHLSGFTTRAGVKVAAGQQIAKMGSTGRSTGSHLHFEVRLNGVAVNPRRFLEAKADVLEVKNDARQRVVSVAAARG
DR
>Mature_401_residues
SSKPTGLRDVRQRFNALFQDHEIFVRTHGHVRFLRVSALWQKRVALIAGLVLLAWAGATLAVLVNQLLTADERAAVAAQK
AAAAASEARIAKYRDRVAETAADLEERQALLESVAESHFGIDPADMATAAQKTHTSDAAPAEPVKTSAIDPNLPPEAQVL
ARLAARQEAFAARLLGAVKDRVAKAETAVAALGLNPDTLVRNAAAGRGGPFIPFRGRGGQAKALGASFAALDGALFRMEV
LERTLVAVPSGNPANVLMMSSGFGYRRDPFTGAGAMHAGVDFRGPIGTPILAAAPGRVSFVGVKSGYGNVVEVDHGQGIM
TRYAHLSGFTTRAGVKVAAGQQIAKMGSTGRSTGSHLHFEVRLNGVAVNPRRFLEAKADVLEVKNDARQRVVSVAAARGD
R

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=118, Percent_Identity=45.7627118644068, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082174, Length=107, Percent_Identity=40.1869158878505, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=43.4343434343434, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082297, Length=88, Percent_Identity=43.1818181818182, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 42356; Mature: 42225

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKPTGLRDVRQRFNALFQDHEIFVRTHGHVRFLRVSALWQKRVALIAGLVLLAWAGAT
CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHH
LAVLVNQLLTADERAAVAAQKAAAAASEARIAKYRDRVAETAADLEERQALLESVAESHF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIDPADMATAAQKTHTSDAAPAEPVKTSAIDPNLPPEAQVLARLAARQEAFAARLLGAVK
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DRVAKAETAVAALGLNPDTLVRNAAAGRGGPFIPFRGRGGQAKALGASFAALDGALFRME
HHHHHHHHHHHEECCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHH
VLERTLVAVPSGNPANVLMMSSGFGYRRDPFTGAGAMHAGVDFRGPIGTPILAAAPGRVS
HHHHHHEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEE
FVGVKSGYGNVVEVDHGQGIMTRYAHLSGFTTRAGVKVAAGQQIAKMGSTGRSTGSHLHF
EEEEECCCCCEEEEECCCCHHHHHHHHCCCCHHCCEEECCCHHHHHHCCCCCCCCCEEEE
EVRLNGVAVNPRRFLEAKADVLEVKNDARQRVVSVAAARGDR
EEEECCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSKPTGLRDVRQRFNALFQDHEIFVRTHGHVRFLRVSALWQKRVALIAGLVLLAWAGAT
CCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHH
LAVLVNQLLTADERAAVAAQKAAAAASEARIAKYRDRVAETAADLEERQALLESVAESHF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIDPADMATAAQKTHTSDAAPAEPVKTSAIDPNLPPEAQVLARLAARQEAFAARLLGAVK
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DRVAKAETAVAALGLNPDTLVRNAAAGRGGPFIPFRGRGGQAKALGASFAALDGALFRME
HHHHHHHHHHHEECCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHH
VLERTLVAVPSGNPANVLMMSSGFGYRRDPFTGAGAMHAGVDFRGPIGTPILAAAPGRVS
HHHHHHEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEE
FVGVKSGYGNVVEVDHGQGIMTRYAHLSGFTTRAGVKVAAGQQIAKMGSTGRSTGSHLHF
EEEEECCCCCEEEEECCCCHHHHHHHHCCCCHHCCEEECCCHHHHHHCCCCCCCCCEEEE
EVRLNGVAVNPRRFLEAKADVLEVKNDARQRVVSVAAARGDR
EEEECCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]