| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485522
Identifier: 103485522
GI number: 103485522
Start: 18852
End: 19247
Strand: Reverse
Name: 103485522
Synonym: Sala_0024
Alternate gene names: NA
Gene position: 19247-18852 (Counterclockwise)
Preceding gene: 103485523
Following gene: 103485518
Centisome position: 0.58
GC content: 65.91
Gene sequence:
>396_bases ATGGCGACGGGCGCGCGCCACACGACCTTCTCGATCCTGGGGTCGGACGTCGTCGTCACCGGTAATGTGGCGGCAAGCGT CGATCTGCACGTCGACGGCAAGATCGAGGGCGACCTCAAATGCGCCAACCTCGTCCAGGGCGAGGCGAGCGAGATCAAGG GCGCGGTGACCGCCGAAACGGCAAAGATCGCGGGCCTGCTCGACGGATCGATCGAGGCCAAGACGCTGATCGTTCACGCC ACCGCGCGGATCACCGGCGACGTGACCTACGAAACGATCACCATCGAAAATGGCGGCAAGGTCGACGGCAAGCTGTCGCA CCGCCGCCATGGCGCGATGGCGGCCAAGGCGCCGCCACCGCTCGAGGTGGTCGAAAACAAGGCGGCTTCGCTCTGA
Upstream 100 bases:
>100_bases CCGCGCCGCTTCCTGGAGGCCAAAGCCGATGTTCTCGAAGTCAAAAACGACGCACGACAGCGAGTCGTCTCCGTCGCTGC CGCCCGCGGTGACCGCTAAG
Downstream 100 bases:
>100_bases TCGCCAGCATCGCGGCGCGCTATTTCAACAGCACGATCTCGCGGCTTGGCGCGCGCGGCGGTCCGTCGCGGTACCGCTGG ACGATGACCCTGTTGCGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAETAKIAGLLDGSIEAKTLIVHA TARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPPLEVVENKAASL
Sequences:
>Translated_131_residues MATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAETAKIAGLLDGSIEAKTLIVHA TARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPPLEVVENKAASL >Mature_130_residues ATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAETAKIAGLLDGSIEAKTLIVHAT ARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPPLEVVENKAASL
Specific function: Unknown
COG id: COG1664
COG function: function code M; Integral membrane protein CcmA involved in cell shape determination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13412; Mature: 13281
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAET CCCCCCCEEEEEECCCEEEECCEEEEEEEEECCEECCCEEEEEECCCCHHHCCCEEEECC AKIAGLLDGSIEAKTLIVHATARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPP EEEEEEECCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCC LEVVENKAASL HHHHCCCCCCC >Mature Secondary Structure ATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAET CCCCCCEEEEEECCCEEEECCEEEEEEEEECCEECCCEEEEEECCCCHHHCCCEEEECC AKIAGLLDGSIEAKTLIVHATARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPP EEEEEEECCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCC LEVVENKAASL HHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA