Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485522

Identifier: 103485522

GI number: 103485522

Start: 18852

End: 19247

Strand: Reverse

Name: 103485522

Synonym: Sala_0024

Alternate gene names: NA

Gene position: 19247-18852 (Counterclockwise)

Preceding gene: 103485523

Following gene: 103485518

Centisome position: 0.58

GC content: 65.91

Gene sequence:

>396_bases
ATGGCGACGGGCGCGCGCCACACGACCTTCTCGATCCTGGGGTCGGACGTCGTCGTCACCGGTAATGTGGCGGCAAGCGT
CGATCTGCACGTCGACGGCAAGATCGAGGGCGACCTCAAATGCGCCAACCTCGTCCAGGGCGAGGCGAGCGAGATCAAGG
GCGCGGTGACCGCCGAAACGGCAAAGATCGCGGGCCTGCTCGACGGATCGATCGAGGCCAAGACGCTGATCGTTCACGCC
ACCGCGCGGATCACCGGCGACGTGACCTACGAAACGATCACCATCGAAAATGGCGGCAAGGTCGACGGCAAGCTGTCGCA
CCGCCGCCATGGCGCGATGGCGGCCAAGGCGCCGCCACCGCTCGAGGTGGTCGAAAACAAGGCGGCTTCGCTCTGA

Upstream 100 bases:

>100_bases
CCGCGCCGCTTCCTGGAGGCCAAAGCCGATGTTCTCGAAGTCAAAAACGACGCACGACAGCGAGTCGTCTCCGTCGCTGC
CGCCCGCGGTGACCGCTAAG

Downstream 100 bases:

>100_bases
TCGCCAGCATCGCGGCGCGCTATTTCAACAGCACGATCTCGCGGCTTGGCGCGCGCGGCGGTCCGTCGCGGTACCGCTGG
ACGATGACCCTGTTGCGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAETAKIAGLLDGSIEAKTLIVHA
TARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPPLEVVENKAASL

Sequences:

>Translated_131_residues
MATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAETAKIAGLLDGSIEAKTLIVHA
TARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPPLEVVENKAASL
>Mature_130_residues
ATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAETAKIAGLLDGSIEAKTLIVHAT
ARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPPLEVVENKAASL

Specific function: Unknown

COG id: COG1664

COG function: function code M; Integral membrane protein CcmA involved in cell shape determination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13412; Mature: 13281

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAET
CCCCCCCEEEEEECCCEEEECCEEEEEEEEECCEECCCEEEEEECCCCHHHCCCEEEECC
AKIAGLLDGSIEAKTLIVHATARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPP
EEEEEEECCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCC
LEVVENKAASL
HHHHCCCCCCC
>Mature Secondary Structure 
ATGARHTTFSILGSDVVVTGNVAASVDLHVDGKIEGDLKCANLVQGEASEIKGAVTAET
CCCCCCEEEEEECCCEEEECCEEEEEEEEECCEECCCEEEEEECCCCHHHCCCEEEECC
AKIAGLLDGSIEAKTLIVHATARITGDVTYETITIENGGKVDGKLSHRRHGAMAAKAPPP
EEEEEEECCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCC
LEVVENKAASL
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA