Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103485511

Identifier: 103485511

GI number: 103485511

Start: 10071

End: 10370

Strand: Reverse

Name: 103485511

Synonym: Sala_0013

Alternate gene names: NA

Gene position: 10370-10071 (Counterclockwise)

Preceding gene: 103485512

Following gene: 103485510

Centisome position: 0.31

GC content: 69.0

Gene sequence:

>300_bases
ATGGGCAGGACCAACGACCGCGTCGACATGCTGAACGTCAACAGCCCGAACCATGTCGTGCGGGTCGAGCGCGTGAAATA
TGAGGCGATGCGCGATGCGATGCTGACGGTGGTGCCCACCGAAGCGCCCGGCCTGACCGCCGCCGAGATCAAGGAGCGCC
TGCTGCCACTGCTCCCCGAGGTGCTGTTCCCCGGCGGGGCCAAGGCCGGCTGGTGGCAAAAGGGCGTCCAGCTCGACCTC
GAGGCGCGCGGGCAGATGGCGCGCTCCGACACCAGGCCGCTGCGCTTCTACCGGCCCTGA

Upstream 100 bases:

>100_bases
ACCGCATGTACGCGCGGCCCAGGGCGCCGGTGACGATCGCTGCGGCATTTGCGGCGCTGGAGGCGGTGGCCGCCGACGCC
GACGGGGCGAGGGCTTGACG

Downstream 100 bases:

>100_bases
GGCTGCATTTCGGAACAGGCTTTTGCAAGGAGAAGAAGGATGACCAATCCCCCAGGCAGCTTCATCTGGTACGAACTGAT
GACGAGCGACCCCGACGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MGRTNDRVDMLNVNSPNHVVRVERVKYEAMRDAMLTVVPTEAPGLTAAEIKERLLPLLPEVLFPGGAKAGWWQKGVQLDL
EARGQMARSDTRPLRFYRP

Sequences:

>Translated_99_residues
MGRTNDRVDMLNVNSPNHVVRVERVKYEAMRDAMLTVVPTEAPGLTAAEIKERLLPLLPEVLFPGGAKAGWWQKGVQLDL
EARGQMARSDTRPLRFYRP
>Mature_98_residues
GRTNDRVDMLNVNSPNHVVRVERVKYEAMRDAMLTVVPTEAPGLTAAEIKERLLPLLPEVLFPGGAKAGWWQKGVQLDLE
ARGQMARSDTRPLRFYRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11200; Mature: 11069

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRTNDRVDMLNVNSPNHVVRVERVKYEAMRDAMLTVVPTEAPGLTAAEIKERLLPLLPE
CCCCCCCEEEEECCCCCCEEEHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHH
VLFPGGAKAGWWQKGVQLDLEARGQMARSDTRPLRFYRP
HHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
GRTNDRVDMLNVNSPNHVVRVERVKYEAMRDAMLTVVPTEAPGLTAAEIKERLLPLLPE
CCCCCCEEEEECCCCCCEEEHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHH
VLFPGGAKAGWWQKGVQLDLEARGQMARSDTRPLRFYRP
HHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA