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The map label for this gene is rnpA [H]

Identifier: 103485504

GI number: 103485504

Start: 5439

End: 6161

Strand: Reverse

Name: rnpA [H]

Synonym: Sala_0006

Alternate gene names: 103485504

Gene position: 6161-5439 (Counterclockwise)

Preceding gene: 103485506

Following gene: 103485503

Centisome position: 0.18

GC content: 68.05

Gene sequence:

>723_bases
ATGTCCGCTTCAAGTGGCGGCACCCCCGCTATGGCGCATGGACCGACCGGGTTATGCGCCGCGTCAGCGCCGCGCGGCGG
CGTGCGCGCCGCGCGCCGGAAACGCCAGATGGCGATTGACTTTGGGCCGACTCTTGCTTATCCGCGCCCCCAACGGTGGC
CGCCCACGCTTGGCGGCCCTTTTCTGTTGCAGCATTTGACGAGATCTAGGGAAAACCGCGATGAAGCGCACCTATCAACC
GAGCCGCCTCGTGCGCAAGCGCCGTCACGGCTTCCGCGCCCGCAAGGCCACCGTCGGCGGTCGCAAGGTTCTGGCCGCCC
GCCGCGCCCGCGGCCGCAAGAAGCTGTCGGCCTGACCGCCGACGCTTCGCCGCCAGCGCGTCTGGTGCGAACGCTTAACA
AACGCAGCGAATTTCTGGCCGCCAACCGCGGCCTTCGCTTTCCCATGCCCGGCTTTGTCCTGCTCGTCCGCCCGCGCGGC
GACGATTCCGACGCGCTGGGCATCGGCTATACCGTCAGCAAGAAGGTCGGGAACGCGGTCACGCGCAACCGGATGAAGCG
CCGCTTTCGCGAACTCGCGCGGGCACTGCTTCCCGAATCGGGGATCGCCGGCGCCGACCATGTGCTGATCGGTCGCCCCG
GCGCCAACGACATCGCCTTTGCCGAGCTTGGCGAGCAGCTCGATTCGGCATTGAAGCGCGCGGCGAAGAAGCTCGCACGA
TGA

Upstream 100 bases:

>100_bases
GGAATCGCGATCGGGCCGCTGCCGGGGCCGGGTTTCCTGATCGTCTTTCCGCTGGGGCTGATGCTCTGCCTTCAGAACAG
CGCGTGGGCGAAGCGCGTCT

Downstream 100 bases:

>100_bases
ATCGCCGCTCCCCGTTCCTGCCGGTCGTCCTCTCCCCTGAAGGGGAGAGGATAGCGCAGCTTGCTCAGCGAGGAGCTAGC
GAAGCCTGGAGAGGGAAACA

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSASSGGTPAMAHGPTGLCAASAPRGGVRAARRKRQMAIDFGPTLAYPRPQRWPPTLGGPFLLQHLTRSRENRDEAHLST
EPPRAQAPSRLPRPQGHRRRSQGSGRPPRPRPQEAVGLTADASPPARLVRTLNKRSEFLAANRGLRFPMPGFVLLVRPRG
DDSDALGIGYTVSKKVGNAVTRNRMKRRFRELARALLPESGIAGADHVLIGRPGANDIAFAELGEQLDSALKRAAKKLAR

Sequences:

>Translated_240_residues
MSASSGGTPAMAHGPTGLCAASAPRGGVRAARRKRQMAIDFGPTLAYPRPQRWPPTLGGPFLLQHLTRSRENRDEAHLST
EPPRAQAPSRLPRPQGHRRRSQGSGRPPRPRPQEAVGLTADASPPARLVRTLNKRSEFLAANRGLRFPMPGFVLLVRPRG
DDSDALGIGYTVSKKVGNAVTRNRMKRRFRELARALLPESGIAGADHVLIGRPGANDIAFAELGEQLDSALKRAAKKLAR
>Mature_239_residues
SASSGGTPAMAHGPTGLCAASAPRGGVRAARRKRQMAIDFGPTLAYPRPQRWPPTLGGPFLLQHLTRSRENRDEAHLSTE
PPRAQAPSRLPRPQGHRRRSQGSGRPPRPRPQEAVGLTADASPPARLVRTLNKRSEFLAANRGLRFPMPGFVLLVRPRGD
DSDALGIGYTVSKKVGNAVTRNRMKRRFRELARALLPESGIAGADHVLIGRPGANDIAFAELGEQLDSALKRAAKKLAR

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 25968; Mature: 25837

Theoretical pI: Translated: 12.29; Mature: 12.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASSGGTPAMAHGPTGLCAASAPRGGVRAARRKRQMAIDFGPTLAYPRPQRWPPTLGGP
CCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHH
FLLQHLTRSRENRDEAHLSTEPPRAQAPSRLPRPQGHRRRSQGSGRPPRPRPQEAVGLTA
HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCC
DASPPARLVRTLNKRSEFLAANRGLRFPMPGFVLLVRPRGDDSDALGIGYTVSKKVGNAV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEECCEEHHHHHHHHH
TRNRMKRRFRELARALLPESGIAGADHVLIGRPGANDIAFAELGEQLDSALKRAAKKLAR
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SASSGGTPAMAHGPTGLCAASAPRGGVRAARRKRQMAIDFGPTLAYPRPQRWPPTLGGP
CCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHH
FLLQHLTRSRENRDEAHLSTEPPRAQAPSRLPRPQGHRRRSQGSGRPPRPRPQEAVGLTA
HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCC
DASPPARLVRTLNKRSEFLAANRGLRFPMPGFVLLVRPRGDDSDALGIGYTVSKKVGNAV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEECCEEHHHHHHHHH
TRNRMKRRFRELARALLPESGIAGADHVLIGRPGANDIAFAELGEQLDSALKRAAKKLAR
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA