| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485506
Identifier: 103485506
GI number: 103485506
Start: 6735
End: 7511
Strand: Reverse
Name: 103485506
Synonym: Sala_0008
Alternate gene names: NA
Gene position: 7511-6735 (Counterclockwise)
Preceding gene: 103485507
Following gene: 103485504
Centisome position: 0.22
GC content: 69.5
Gene sequence:
>777_bases ATGGCTTCGCCGTCTGCCCTGCTGCGCACGCTGATCGTCGCCGCGCTCGCCGCGGTGCTGGCGTTCGCGCCCGCGCAGGC ACAGCGGGTCACGGTCGTCACCACGACGGTGACATGGACCCATGCCGACGCGGGCGACGATGACTTGGGCTATATCGAGG AGGATGCGGCGCTCCTCGATGACGAAGCGCTGGCCGAGGAAGAGGCGTTCGCGGCGACGCGGCGCTATGCGCCCACCGCC ACGCTCGCGACGCCGGGACAGGCGAAGGCGAGCTTCGGTCCCTTTTCGGTGATCGACGCCGCAACGGCGCGGATGGCGGG CGACGTCACTTCGGCGACCCCGCGCCAGTTCGCCGCGATGCTCGCCGCCTTTCCGGGGCTGAAGAGGATCGAGATGATCG ACTGCCCCGGCAGCCTCGACGAGGACGCCAATCTGGCGCTGGCGCGCGCGATCCGCCGCGCGGGACTGGAAACCGTGGTG CCCGCGGGCGGCTCGATCCGCTCGGGCGCGGTCGAGCTGTGGCTCGCCGGCGCCACGCGCCGCGCGGCGCCCGACGCCGA GTTCGGCGTGCATAGCTGGGCCGACGAATATGGGCGCGAGGCGAACGACTATCCGGCGAACGATCCAGTCCACGCCGACT ATATCGCCCTTTATCGCGAAATGGGCATGGACGCCGCGAAGGCGCGCGAATTTTACGCGCTGACCAATGCGACGCCATTC GACGAGGTGCGTTACCTGACCCGCGACGATATGGCGCGGTTTGTCGCGCTCAACTGA
Upstream 100 bases:
>100_bases GGCGCGCCCGACCGCGATTAAACGTCCCGCAACGGGGTTAACGCGGCGCTGACGCTGCCGCTTTGCCAATTGGTCATCGC GGGCGCGCGAAGGCTGGGGC
Downstream 100 bases:
>100_bases CTATCACCGCCAGGGCGCGTCGCGCGCCGGGCATGCTGACCCTAACAATTGCCTTTGACGCCGTCGGCACAGTCGCCGAC CGATTCAATATCTTTTCCCG
Product: hydrolase, alpha/beta fold family protein
Products: NA
Alternate protein names: Alpha/Beta Fold Family Hydrolase; Hydrolase Alpha/Beta Fold Family Protein
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MASPSALLRTLIVAALAAVLAFAPAQAQRVTVVTTTVTWTHADAGDDDLGYIEEDAALLDDEALAEEEAFAATRRYAPTA TLATPGQAKASFGPFSVIDAATARMAGDVTSATPRQFAAMLAAFPGLKRIEMIDCPGSLDEDANLALARAIRRAGLETVV PAGGSIRSGAVELWLAGATRRAAPDAEFGVHSWADEYGREANDYPANDPVHADYIALYREMGMDAAKAREFYALTNATPF DEVRYLTRDDMARFVALN
Sequences:
>Translated_258_residues MASPSALLRTLIVAALAAVLAFAPAQAQRVTVVTTTVTWTHADAGDDDLGYIEEDAALLDDEALAEEEAFAATRRYAPTA TLATPGQAKASFGPFSVIDAATARMAGDVTSATPRQFAAMLAAFPGLKRIEMIDCPGSLDEDANLALARAIRRAGLETVV PAGGSIRSGAVELWLAGATRRAAPDAEFGVHSWADEYGREANDYPANDPVHADYIALYREMGMDAAKAREFYALTNATPF DEVRYLTRDDMARFVALN >Mature_257_residues ASPSALLRTLIVAALAAVLAFAPAQAQRVTVVTTTVTWTHADAGDDDLGYIEEDAALLDDEALAEEEAFAATRRYAPTAT LATPGQAKASFGPFSVIDAATARMAGDVTSATPRQFAAMLAAFPGLKRIEMIDCPGSLDEDANLALARAIRRAGLETVVP AGGSIRSGAVELWLAGATRRAAPDAEFGVHSWADEYGREANDYPANDPVHADYIALYREMGMDAAKAREFYALTNATPFD EVRYLTRDDMARFVALN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27461; Mature: 27330
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASPSALLRTLIVAALAAVLAFAPAQAQRVTVVTTTVTWTHADAGDDDLGYIEEDAALLD CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHC DEALAEEEAFAATRRYAPTATLATPGQAKASFGPFSVIDAATARMAGDVTSATPRQFAAM HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH LAAFPGLKRIEMIDCPGSLDEDANLALARAIRRAGLETVVPAGGSIRSGAVELWLAGATR HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCC RAAPDAEFGVHSWADEYGREANDYPANDPVHADYIALYREMGMDAAKAREFYALTNATPF CCCCCCHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHEEECCCCCH DEVRYLTRDDMARFVALN HHHHHHHHHHHHHHHCCC >Mature Secondary Structure ASPSALLRTLIVAALAAVLAFAPAQAQRVTVVTTTVTWTHADAGDDDLGYIEEDAALLD CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHC DEALAEEEAFAATRRYAPTATLATPGQAKASFGPFSVIDAATARMAGDVTSATPRQFAAM HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH LAAFPGLKRIEMIDCPGSLDEDANLALARAIRRAGLETVVPAGGSIRSGAVELWLAGATR HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCC RAAPDAEFGVHSWADEYGREANDYPANDPVHADYIALYREMGMDAAKAREFYALTNATPF CCCCCCHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHEEECCCCCH DEVRYLTRDDMARFVALN HHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA