| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99082833
Identifier: 99082833
GI number: 99082833
Start: 3159600
End: 3160313
Strand: Direct
Name: 99082833
Synonym: TM1040_2993
Alternate gene names: NA
Gene position: 3159600-3160313 (Clockwise)
Preceding gene: 99082830
Following gene: 99082837
Centisome position: 98.71
GC content: 60.36
Gene sequence:
>714_bases ATGTTGACCCTTATGACCCATGGCGGCGGTGACGGATTTTACAGCTACAGCATGTTTTGCACCAAGGCGGCGCTGTTGCT GCAGATGTCAGGTGCGACCTGGCAACGGCAGGATGTTTTTGATCCGGCGGAGCTCGACGCGATGCCGCACCAAAAGCTTC CGGTGGTGCGGGACGAGACTGACGCCTTGATCCCCGACAGCGAAGGCATCCGCCGTTTTCTCGAAGCCAAAGGCGCGAAC TTCGACCAAGGTCTTAGCGCCGCTCAAAAGGGCCAGTCCCGCGCGCTCATCCGCATGATCGACGAATCGCTCTGGACACA GTTGATGTGCGCGCGCTGGCTCGAAGACGAAGGCTGGGCCGGGATGCTGCAGTCAGTGTTTGCAGGGGTGCCCGAAGAGC CGCTGAACCTCTTTCGCGAGAAGGTGGTTGAAGGGCTTCATTTCACTGGGCACTCGCGTTTTGATCGTGCGGAACGCCTG CAGCGTCTGGAGCAGGATCTTTGCGCGCTCGAAGATTTTCTTGGCGATCAGCACTTCTTGTTCGGTGATCATATGACGGC AGCGGATTGTTCTGCGGCACCGATGCTCGAGGCGCTGTCCCGCGCTCCCGCCGCGCCGCAGGTGGTTGAGGTCACGCGAC GCCACGGAAAGCTCCTGGCCTATGTCACACGCGTGCTGGATCGTGGCGCGCTCGAATTGCCCCAAGCTGCATAA
Upstream 100 bases:
>100_bases TCGGTTTTTGTCATCTGTCTAGTGTGGAGTCCGCTAATGACAAAAACTGTCAATAGCGCCTTGTAGCACGGTCTCATCAT AATCCAAACGGAGAGAGACG
Downstream 100 bases:
>100_bases AGTGTTGGGAATGCGACGCGAATATTGATCCCATGGGCGGGGCTCTCCCGCCCGTGGCTCCTGCACTCTGGATGCAAGGG CCTCGATTTGGCTGGGCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDETDALIPDSEGIRRFLEAKGAN FDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWAGMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERL QRLEQDLCALEDFLGDQHFLFGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA
Sequences:
>Translated_237_residues MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDETDALIPDSEGIRRFLEAKGAN FDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWAGMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERL QRLEQDLCALEDFLGDQHFLFGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA >Mature_237_residues MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDETDALIPDSEGIRRFLEAKGAN FDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWAGMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERL QRLEQDLCALEDFLGDQHFLFGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26408; Mature: 26408
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDET CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHCCCCCCCCCCEECCC DALIPDSEGIRRFLEAKGANFDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWA CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH GMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERLQRLEQDLCALEDFLGDQHFL HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE FGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA ECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MLTLMTHGGGDGFYSYSMFCTKAALLLQMSGATWQRQDVFDPAELDAMPHQKLPVVRDET CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHCCCCCCCCCCEECCC DALIPDSEGIRRFLEAKGANFDQGLSAAQKGQSRALIRMIDESLWTQLMCARWLEDEGWA CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH GMLQSVFAGVPEEPLNLFREKVVEGLHFTGHSRFDRAERLQRLEQDLCALEDFLGDQHFL HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE FGDHMTAADCSAAPMLEALSRAPAAPQVVEVTRRHGKLLAYVTRVLDRGALELPQAA ECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA