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The map label for this gene is flgD [H]

Identifier: 99082818

GI number: 99082818

Start: 3142545

End: 3143240

Strand: Direct

Name: flgD [H]

Synonym: TM1040_2978

Alternate gene names: 99082818

Gene position: 3142545-3143240 (Clockwise)

Preceding gene: 99082817

Following gene: 99082819

Centisome position: 98.18

GC content: 56.9

Gene sequence:

>696_bases
ATGACCACAGCAGTAACGGGTGTTGGCACCCAGCAAACAACGACAGCTGGTGGGACGGCTGGGACGCAGTCGGCGACAAG
CGCGCTCACCTCGGATTTTGAAACTTTCCTGAGGCTGATGACCACGCAGGCAAAATACCAGGACCCGCTCGAGCCGATGG
ATTCGTCAGATTATACCGCGCAGCTAGCGCAGTTCTCCTCTGTCGAGCAGCAGGTTCTGACCAATGAAACCCTGACAAGC
ATGCTCACCGCGCTTTCTCTTTCCAACATGTCTCAGCTGACCGGCTGGGTTGGAAGAGAGGTGCGGGCGCAAGCAGCCGG
CTATTTTGATGGTAGCTCTTCGGTTTCGATTGCACCGAATCCTGCTGCTGTCGCGGATAAGGTCGAGATGATCATCTATG
ACGACCAGGAAGCAGAAGTCGGCCGCGTGGATCTGCCGGTCTCTGCCGAGCCTTATCAGTGGAATGGCGAAGACGGTGAT
GGCAACACCTTGCCTGAGGGCTCCTACAGCTTTGTGATCGAAAGCTCCTCCAATGGTGAGGTGATCCTTTCCGAATTGGC
CGAGGTGTACGGACGCGTGGAAGAGACCCAGAATGTCGACGGTGAAGTGGCCTTGATCCTTGAGAGCGGAAGCGCAATCC
TCGCGACCTCGGTGACGGCGCTGCGTGATCCAACCAGTTCCTCTGGCAATTCCTGA

Upstream 100 bases:

>100_bases
CAAGGCGAGGGCGATGCCCTTGAAGCCGCTCAGTCCGGTCTTCCGATATCACAACACTTGAACATCTCGGCCGATGGCCT
GGACATGAGGATTTAAGAGC

Downstream 100 bases:

>100_bases
TTTGCGACGTTAACCGGGCCTTGTAATCGCCAAGGAAGCGGGGGATCCGGTGAGCGGAGCTATTTTGTCAGGACCTGAGC
AAAAACCAGATCAGGATGAT

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTTAVTGVGTQQTTTAGGTAGTQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTS
MLTALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPNPAAVADKVEMIIYDDQEAEVGRVDLPVSAEPYQWNGEDGD
GNTLPEGSYSFVIESSSNGEVILSELAEVYGRVEETQNVDGEVALILESGSAILATSVTALRDPTSSSGNS

Sequences:

>Translated_231_residues
MTTAVTGVGTQQTTTAGGTAGTQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTS
MLTALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPNPAAVADKVEMIIYDDQEAEVGRVDLPVSAEPYQWNGEDGD
GNTLPEGSYSFVIESSSNGEVILSELAEVYGRVEETQNVDGEVALILESGSAILATSVTALRDPTSSSGNS
>Mature_230_residues
TTAVTGVGTQQTTTAGGTAGTQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTSM
LTALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPNPAAVADKVEMIIYDDQEAEVGRVDLPVSAEPYQWNGEDGDG
NTLPEGSYSFVIESSSNGEVILSELAEVYGRVEETQNVDGEVALILESGSAILATSVTALRDPTSSSGNS

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=162, Percent_Identity=31.4814814814815, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24280; Mature: 24148

Theoretical pI: Translated: 3.57; Mature: 3.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAVTGVGTQQTTTAGGTAGTQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTA
CCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
QLAQFSSVEQQVLTNETLTSMLTALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
PAAVADKVEMIIYDDQEAEVGRVDLPVSAEPYQWNGEDGDGNTLPEGSYSFVIESSSNGE
CHHHHCCEEEEEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCC
VILSELAEVYGRVEETQNVDGEVALILESGSAILATSVTALRDPTSSSGNS
CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TTAVTGVGTQQTTTAGGTAGTQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTA
CCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
QLAQFSSVEQQVLTNETLTSMLTALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
PAAVADKVEMIIYDDQEAEVGRVDLPVSAEPYQWNGEDGDGNTLPEGSYSFVIESSSNGE
CHHHHCCEEEEEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCC
VILSELAEVYGRVEETQNVDGEVALILESGSAILATSVTALRDPTSSSGNS
CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]