Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082817

Identifier: 99082817

GI number: 99082817

Start: 3140954

End: 3142540

Strand: Direct

Name: 99082817

Synonym: TM1040_2977

Alternate gene names: NA

Gene position: 3140954-3142540 (Clockwise)

Preceding gene: 99082810

Following gene: 99082818

Centisome position: 98.13

GC content: 59.29

Gene sequence:

>1587_bases
ATGATTGATAAAATCCTTACGACACAGTCTGTTGGCAGTACGTCAACTGAGTCGTCCAAGCGAACGGAGCCCGCGCGCCG
AGGCGGTGATTCATTCGAGTCCGTTCTTGCCCGCGAGGCAAAAACAAAAGACAAAACCAAGACCTCTCCGGATGTCGAGA
CACCTTCTGGCGCAGAGCATGACGACAAGGCTTTTGACGCTAAGAATAACGCGAAGGCCACCGCAGCTGACCAGCATGCG
AAGGGTGAGGAATCGCATCCAGAGCAGGACGCGGGTGAAACGTCCCTGGTTGCTCCGGACGAAAACCCTGAGAGCGAATG
GGCAAGTGTCATCGACACCGCAACACAGCCCGACGTCGAGGAAGCCCTGGACGAGGCGCTCCCCGAGCTTGATACATCCG
CAGAGGATTTTGCGCAGGCGGATGTGGCAGAGGGTCAGGCAGTTGCTGCTGCAGGCGCCACACAGGTGTCATCTGATCAA
TCTGCAAAGGGCTCCGGCGATCAGGTGATGCGCGCGGGCGCTCCTGTGACGCATGGCTCTGCCACTGACAAAGCGGTGGA
GGTGGCCATAAAAGGTGCTGCCTCGGCTGAGGCAGATGCCGAAATGAATTCAATGGAGGCGGCGCGTACGGGGCTCTTGT
CAGATAAAGACGAACGTCTCGGCACATCAGTTCTCTTGGAAACACATCGAGATGGGCGACGCCAACAGCTTGTGCCCGGA
ACAGTCGGCGCGATTGCTGCCGAAAAAGGTGCGCAGCCGCCTGCGCAGGCACAGGCTCAGACCGCTCTGGAGGCGCTGAA
AACAGGGGCGCCCACATCTCCTCCGGGACAGGAGAAAGCCACTGAAGCGCGCATCCGTGATATACCATTGACCGCAGCTC
AGGCACAGGTCGCGGCTTCCACAGCGACTGCGCGCGCGCCAATGAACAGTGGTGATACCCGCCTTTTGCACCCTGCGGCC
TCGGGGAGTGCGCAGGCCTTGGCCTCCGCGCGCTTCCAGATGAGTGATACGGTCCTCAAGTCAAGCTCCGCCGTGGTGAC
CAGCCTGATGGGAGCAAATGATGCAGGACGCGTAGGAGATGACGTTCTGACGCAACGCGGTGCGGAGAGCTTTGCGTTGC
CACAACTTTTGGCGGAGGCCTCCGTCAGATCTGGAGCATCCAGCTTTCGCGCCGAAACGCCCCGGCATGTAGCGCAACAA
CTTGCAGAGGCCGTCGCGACGGGCGGCAAACGCAATGTGGATGTCACACTGAACCCGCGTGAGCTGGGCCATGTGAACAT
GCGGGTGATGACAACAGAAATGGGCGTCACGATCACCATCAACGCCGAACGTCCTGAGACCGAGGACCTGATGCGTCGTC
ACATCCAGGATCTTGCCCGCGAATTCAAGGAAATGGGCTTCACCGATATCTCTTTCCAATTTGGCTCTGACACCGACGCC
GGTCAGTCAGGGGAGGGAGAGAGCAGTCTTGGGGGCAACGGATCCGAGCAGCAAGGCGAGGGCGATGCCCTTGAAGCCGC
TCAGTCCGGTCTTCCGATATCACAACACTTGAACATCTCGGCCGATGGCCTGGACATGAGGATTTAA

Upstream 100 bases:

>100_bases
GAATTCTTCGATAATTCTCACTTTGACGAAAACCGGTTAAAAATGCCGTAACTGATTTCATTTATTCAGGGTTCACACGA
GATAGAACATCCGGTGGATC

Downstream 100 bases:

>100_bases
GAGCATGACCACAGCAGTAACGGGTGTTGGCACCCAGCAAACAACGACAGCTGGTGGGACGGCTGGGACGCAGTCGGCGA
CAAGCGCGCTCACCTCGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEHDDKAFDAKNNAKATAADQHA
KGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVEEALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQ
SAKGSGDQVMRAGAPVTHGSATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG
TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAASTATARAPMNSGDTRLLHPAA
SGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGDDVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQ
LAEAVATGGKRNVDVTLNPRELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA
GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI

Sequences:

>Translated_528_residues
MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEHDDKAFDAKNNAKATAADQHA
KGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVEEALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQ
SAKGSGDQVMRAGAPVTHGSATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG
TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAASTATARAPMNSGDTRLLHPAA
SGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGDDVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQ
LAEAVATGGKRNVDVTLNPRELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA
GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI
>Mature_528_residues
MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEHDDKAFDAKNNAKATAADQHA
KGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVEEALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQ
SAKGSGDQVMRAGAPVTHGSATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG
TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAASTATARAPMNSGDTRLLHPAA
SGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGDDVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQ
LAEAVATGGKRNVDVTLNPRELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA
GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54832; Mature: 54832

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEH
CCCCHHCCCCCCCCCCCCHHCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DDKAFDAKNNAKATAADQHAKGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVE
CCHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCHH
EALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQSAKGSGDQVMRAGAPVTHGS
HHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCHHCCCCCCCCCCCHHHHHCCCCCCCCC
ATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG
CCCHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHCCCCCCCCCCCCC
TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAAS
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
TATARAPMNSGDTRLLHPAASGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGD
HHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCH
DVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQLAEAVATGGKRNVDVTLNPR
HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECHH
ELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA
HHCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEH
CCCCHHCCCCCCCCCCCCHHCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DDKAFDAKNNAKATAADQHAKGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVE
CCHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCHH
EALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQSAKGSGDQVMRAGAPVTHGS
HHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCHHCCCCCCCCCCCHHHHHCCCCCCCCC
ATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG
CCCHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHCCCCCCCCCCCCC
TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAAS
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
TATARAPMNSGDTRLLHPAASGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGD
HHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCH
DVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQLAEAVATGGKRNVDVTLNPR
HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECHH
ELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA
HHCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA