| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082817
Identifier: 99082817
GI number: 99082817
Start: 3140954
End: 3142540
Strand: Direct
Name: 99082817
Synonym: TM1040_2977
Alternate gene names: NA
Gene position: 3140954-3142540 (Clockwise)
Preceding gene: 99082810
Following gene: 99082818
Centisome position: 98.13
GC content: 59.29
Gene sequence:
>1587_bases ATGATTGATAAAATCCTTACGACACAGTCTGTTGGCAGTACGTCAACTGAGTCGTCCAAGCGAACGGAGCCCGCGCGCCG AGGCGGTGATTCATTCGAGTCCGTTCTTGCCCGCGAGGCAAAAACAAAAGACAAAACCAAGACCTCTCCGGATGTCGAGA CACCTTCTGGCGCAGAGCATGACGACAAGGCTTTTGACGCTAAGAATAACGCGAAGGCCACCGCAGCTGACCAGCATGCG AAGGGTGAGGAATCGCATCCAGAGCAGGACGCGGGTGAAACGTCCCTGGTTGCTCCGGACGAAAACCCTGAGAGCGAATG GGCAAGTGTCATCGACACCGCAACACAGCCCGACGTCGAGGAAGCCCTGGACGAGGCGCTCCCCGAGCTTGATACATCCG CAGAGGATTTTGCGCAGGCGGATGTGGCAGAGGGTCAGGCAGTTGCTGCTGCAGGCGCCACACAGGTGTCATCTGATCAA TCTGCAAAGGGCTCCGGCGATCAGGTGATGCGCGCGGGCGCTCCTGTGACGCATGGCTCTGCCACTGACAAAGCGGTGGA GGTGGCCATAAAAGGTGCTGCCTCGGCTGAGGCAGATGCCGAAATGAATTCAATGGAGGCGGCGCGTACGGGGCTCTTGT CAGATAAAGACGAACGTCTCGGCACATCAGTTCTCTTGGAAACACATCGAGATGGGCGACGCCAACAGCTTGTGCCCGGA ACAGTCGGCGCGATTGCTGCCGAAAAAGGTGCGCAGCCGCCTGCGCAGGCACAGGCTCAGACCGCTCTGGAGGCGCTGAA AACAGGGGCGCCCACATCTCCTCCGGGACAGGAGAAAGCCACTGAAGCGCGCATCCGTGATATACCATTGACCGCAGCTC AGGCACAGGTCGCGGCTTCCACAGCGACTGCGCGCGCGCCAATGAACAGTGGTGATACCCGCCTTTTGCACCCTGCGGCC TCGGGGAGTGCGCAGGCCTTGGCCTCCGCGCGCTTCCAGATGAGTGATACGGTCCTCAAGTCAAGCTCCGCCGTGGTGAC CAGCCTGATGGGAGCAAATGATGCAGGACGCGTAGGAGATGACGTTCTGACGCAACGCGGTGCGGAGAGCTTTGCGTTGC CACAACTTTTGGCGGAGGCCTCCGTCAGATCTGGAGCATCCAGCTTTCGCGCCGAAACGCCCCGGCATGTAGCGCAACAA CTTGCAGAGGCCGTCGCGACGGGCGGCAAACGCAATGTGGATGTCACACTGAACCCGCGTGAGCTGGGCCATGTGAACAT GCGGGTGATGACAACAGAAATGGGCGTCACGATCACCATCAACGCCGAACGTCCTGAGACCGAGGACCTGATGCGTCGTC ACATCCAGGATCTTGCCCGCGAATTCAAGGAAATGGGCTTCACCGATATCTCTTTCCAATTTGGCTCTGACACCGACGCC GGTCAGTCAGGGGAGGGAGAGAGCAGTCTTGGGGGCAACGGATCCGAGCAGCAAGGCGAGGGCGATGCCCTTGAAGCCGC TCAGTCCGGTCTTCCGATATCACAACACTTGAACATCTCGGCCGATGGCCTGGACATGAGGATTTAA
Upstream 100 bases:
>100_bases GAATTCTTCGATAATTCTCACTTTGACGAAAACCGGTTAAAAATGCCGTAACTGATTTCATTTATTCAGGGTTCACACGA GATAGAACATCCGGTGGATC
Downstream 100 bases:
>100_bases GAGCATGACCACAGCAGTAACGGGTGTTGGCACCCAGCAAACAACGACAGCTGGTGGGACGGCTGGGACGCAGTCGGCGA CAAGCGCGCTCACCTCGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 528; Mature: 528
Protein sequence:
>528_residues MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEHDDKAFDAKNNAKATAADQHA KGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVEEALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQ SAKGSGDQVMRAGAPVTHGSATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAASTATARAPMNSGDTRLLHPAA SGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGDDVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQ LAEAVATGGKRNVDVTLNPRELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI
Sequences:
>Translated_528_residues MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEHDDKAFDAKNNAKATAADQHA KGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVEEALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQ SAKGSGDQVMRAGAPVTHGSATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAASTATARAPMNSGDTRLLHPAA SGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGDDVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQ LAEAVATGGKRNVDVTLNPRELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI >Mature_528_residues MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEHDDKAFDAKNNAKATAADQHA KGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVEEALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQ SAKGSGDQVMRAGAPVTHGSATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAASTATARAPMNSGDTRLLHPAA SGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGDDVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQ LAEAVATGGKRNVDVTLNPRELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54832; Mature: 54832
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEH CCCCHHCCCCCCCCCCCCHHCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC DDKAFDAKNNAKATAADQHAKGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVE CCHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCHH EALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQSAKGSGDQVMRAGAPVTHGS HHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCHHCCCCCCCCCCCHHHHHCCCCCCCCC ATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG CCCHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHCCCCCCCCCCCCC TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAAS HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH TATARAPMNSGDTRLLHPAASGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGD HHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCH DVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQLAEAVATGGKRNVDVTLNPR HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECHH ELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA HHCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCCC >Mature Secondary Structure MIDKILTTQSVGSTSTESSKRTEPARRGGDSFESVLAREAKTKDKTKTSPDVETPSGAEH CCCCHHCCCCCCCCCCCCHHCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC DDKAFDAKNNAKATAADQHAKGEESHPEQDAGETSLVAPDENPESEWASVIDTATQPDVE CCHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCHH EALDEALPELDTSAEDFAQADVAEGQAVAAAGATQVSSDQSAKGSGDQVMRAGAPVTHGS HHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCHHCCCCCCCCCCCHHHHHCCCCCCCCC ATDKAVEVAIKGAASAEADAEMNSMEAARTGLLSDKDERLGTSVLLETHRDGRRQQLVPG CCCHHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHCCCCCCCCCCCCC TVGAIAAEKGAQPPAQAQAQTALEALKTGAPTSPPGQEKATEARIRDIPLTAAQAQVAAS HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH TATARAPMNSGDTRLLHPAASGSAQALASARFQMSDTVLKSSSAVVTSLMGANDAGRVGD HHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCH DVLTQRGAESFALPQLLAEASVRSGASSFRAETPRHVAQQLAEAVATGGKRNVDVTLNPR HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECHH ELGHVNMRVMTTEMGVTITINAERPETEDLMRRHIQDLAREFKEMGFTDISFQFGSDTDA HHCCEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC GQSGEGESSLGGNGSEQQGEGDALEAAQSGLPISQHLNISADGLDMRI CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA