| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is secA
Identifier: 99082757
GI number: 99082757
Start: 3085207
End: 3087894
Strand: Direct
Name: secA
Synonym: TM1040_2917
Alternate gene names: 99082757
Gene position: 3085207-3087894 (Clockwise)
Preceding gene: 99082752
Following gene: 99082758
Centisome position: 96.38
GC content: 58.59
Gene sequence:
>2688_bases ATGCTGGGTATCGGAACTCTCGCCAAAAAGGTCTTCGGAACACCGAACGACCGCAAAATCAAGGCGACACGGCCGCTGAT TGCAAAGATCAACGCGCTGGAGCCTGAGTTCGAGGCACTGAGCGACCAGGGCATCAAAGACAAGACCGAAGACCTGCGCA AACGGGCGCTTGCGGGTGAAAGCCTTGACGATCTGTTGCCCGAAGCCTTTGCCAACGTGCGCGAAGCAGCGCGCCGCGCC CTTGGCCTGCGGGCGTTTGACACCCAGCTGATGGGCGGAACCTTCCTGCATCAGGGCAATATCTCCGAGATGAAGACGGG TGAAGGGAAAACCCTTGTGGCGACCTTCCCAGCTTACCTCAACGCGCTGACCGGCAAAGGGGTGCATGTCGTCACGGTGA ACGAATACCTCGCCAAGCGTGACAGCGAGTGGATGAGCAAGGTCTTTGGTGCTTTGGGCATGACCACCGGCGTGATCTAC TCAAACCAGCCCGAGGCGGAGAAAATGGCCGCCTATCAATGTGACGTGACCTACGCCACCAACAATGAGCTTGGCTTTGA TTACCTGCGCGACAACATGAAGCCCTCTCTGGACCAGGTGTTCCAGAAGCAGCACAACTTTGCGATCGTGGATGAGGTCG ACTCGATCCTGATCGACGAGGCGCGCACGCCGCTGATCATTTCCGGCCCGGCCGAGGATCGTTCCGAGCTCTATGAAACC ATCGACAAGCTGATCCCGACGCTGGATGAGGGTCACTATGAGATCGACGAGAAAACGCGCGGTGTGACCTTCACGGACGA GGGCAATGAATTCCTCGAAGAGTCGCTTCTGAAGGCGGGGCTGCTGGAAGAAGGGGCGAGCCTTTATGACCCCGAGAGCA CGACGATTGTTCACCACGTCAACCAGGCCCTGCGGGCGCACAAGCTGTTCCAGCGCGACAAGGACTATATCGTGCGCGAC GGCAATGTTGTTCTGATCGACGAATTCACGGGCCGCATGATGCCCGGTCGCCGTCTCTCCGAGGGGCTGCATCAGGCCAT CGAGGCGAAGGAAGGCACAGATATCCAACCGGAAAACACCACGCTGGCGTCGGTGACCTTCCAGAACTACTTCCGCCTTT ATGACAAGCTCTCTGGCATGACCGGCACGGCGATGACCGAAGCTGAAGAATTTGCCGAGATCTATGGACTGGGTGTGGTC GAGGTGCCCACGAACAGACCGATCGCGCGGATCGACGAGGACGACAAGGTCTATCGCACAGCCAACGAAAAATATGCGGC CATGATCGCGGAGACCAAGCTTGCCCATGAAAAAGGCCAGCCGGTTCTTCTCGGGACCACGTCGATTGAGAAATCCGAAC TGCTCAGTCAGCTCCTTCAGCAGGAAGGCATCGAACACAACGTTCTGAACGCGCGCCACCACGAGCAAGAAGCCAAGATC GTTGCCGAGGCGGGCCGTTTGGGCGCAGTGACCATCGCCACCAACATGGCGGGGCGCGGCACCGACATTCAGCTTGGCGG CAACATTGATCTGAAGGTGATGGAGGCGCTTGAGGCCAACCCCGACGCCGACCCGGCTGTTCTGCGTGCTGAGGAAGAAG CCAAACACGCCGAGGAAAAGCAGAAAGTGCTCGAAGCGGGTGGCCTCTATGTGATGGCCTCCGAACGCCACGAAAGCCGC CGCATCGACAACCAGCTGCGCGGTCGTTCCGGACGTCAGGGGGACCCGGGCCGCACCAGTTTCTACCTTAGCCTCGAAGA TGATCTGATGCGCATTTTCGGCTCCGAGCGGTTGGACAAGCTGTTGTCGGGTCTGGGCATGAAAGAAGGCGAGGCGATCA TTCACCCGTGGGTGAACAAATCGCTTGAGCGCGCGCAGGCCAAGGTCGAAGGCCGTAACTTCGACATGCGCAAGAACGTG TTGAAGTTCGACGACGTGATGAATGATCAGCGTAAAGTGGTCTTTGCGCAGCGCCGCGAGATCATGGCCTCTGACGATAC CCATGAGATCGTCACTGACATGCGCCATGAGGTGATCGATGATCTCATCGATATTTACATGCCGCCCAAAACCTATGCCG ACCAATGGGATACCCAAGGGTTGCAGGACGACGTGCGCGAGAAGCTCAACATTGATGCTCCTGTGGTCGAATGGGCCGCA GAAGAGGGTGTCGACGACGAGCAGATCCGCGAACGTCTGGTAGAGGCCTCCGACAAGCTGATGGCCGAGAAGGTCGAAGC CTTTGGTCAGGAAGGCATGAGCAACATCGAAAAGCAGGTGCTGCTGCAGACCATCGACGCCAAATGGCGCGAACATCTGC TGACGCTCGAACATCTGCGCTCCGTTGTCGGCTTCCGGGGCTACGCCCAGCGTGATCCGCTCAACGAGTACAAGAACGAG AGCTTCCAGTTGTTTGAGTCGATGCTGGATTCCTTGCGCGAGACCGTCACCCAACAGCTTTCTCGCGTGCGTCCTCTGAG CGAAGAGGAACAGCGCGAGATGATGATGCAGATGGCGGCACGTCAGGGCATGCAGCGCGCGGCTGCGCCTGCCGCCGAGC CTGTCGAAGCGCCCAAAGAAGGATTTGTCGAGGATGACCCCTCCACCTGGGGCAACCCCTCGCGCAACGACAAGTGCCCC TGTGGATCTGGGAAAAAGTTTAAGCATTGCCACGGCCGGCTGGGTTAA
Upstream 100 bases:
>100_bases CCTGCGGCAGGACCGTCTTTCCACCTTTGTTTATGGGTTGCGAACACGGCGGGCAAGCCTGCCGCTGAACAAGGCCGTGA ACTGGACTTTTGGAGCGCAC
Downstream 100 bases:
>100_bases TACGGGCGCAGGCAATCTAATTGCCCGAAACCATTGCAGACTGTGACACTGGCCGTCTTTCTTTCCGGCCTCTGCCACAG TCTGGCCACCCTGATGGGAT
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 895; Mature: 895
Protein sequence:
>895_residues MLGIGTLAKKVFGTPNDRKIKATRPLIAKINALEPEFEALSDQGIKDKTEDLRKRALAGESLDDLLPEAFANVREAARRA LGLRAFDTQLMGGTFLHQGNISEMKTGEGKTLVATFPAYLNALTGKGVHVVTVNEYLAKRDSEWMSKVFGALGMTTGVIY SNQPEAEKMAAYQCDVTYATNNELGFDYLRDNMKPSLDQVFQKQHNFAIVDEVDSILIDEARTPLIISGPAEDRSELYET IDKLIPTLDEGHYEIDEKTRGVTFTDEGNEFLEESLLKAGLLEEGASLYDPESTTIVHHVNQALRAHKLFQRDKDYIVRD GNVVLIDEFTGRMMPGRRLSEGLHQAIEAKEGTDIQPENTTLASVTFQNYFRLYDKLSGMTGTAMTEAEEFAEIYGLGVV EVPTNRPIARIDEDDKVYRTANEKYAAMIAETKLAHEKGQPVLLGTTSIEKSELLSQLLQQEGIEHNVLNARHHEQEAKI VAEAGRLGAVTIATNMAGRGTDIQLGGNIDLKVMEALEANPDADPAVLRAEEEAKHAEEKQKVLEAGGLYVMASERHESR RIDNQLRGRSGRQGDPGRTSFYLSLEDDLMRIFGSERLDKLLSGLGMKEGEAIIHPWVNKSLERAQAKVEGRNFDMRKNV LKFDDVMNDQRKVVFAQRREIMASDDTHEIVTDMRHEVIDDLIDIYMPPKTYADQWDTQGLQDDVREKLNIDAPVVEWAA EEGVDDEQIRERLVEASDKLMAEKVEAFGQEGMSNIEKQVLLQTIDAKWREHLLTLEHLRSVVGFRGYAQRDPLNEYKNE SFQLFESMLDSLRETVTQQLSRVRPLSEEEQREMMMQMAARQGMQRAAAPAAEPVEAPKEGFVEDDPSTWGNPSRNDKCP CGSGKKFKHCHGRLG
Sequences:
>Translated_895_residues MLGIGTLAKKVFGTPNDRKIKATRPLIAKINALEPEFEALSDQGIKDKTEDLRKRALAGESLDDLLPEAFANVREAARRA LGLRAFDTQLMGGTFLHQGNISEMKTGEGKTLVATFPAYLNALTGKGVHVVTVNEYLAKRDSEWMSKVFGALGMTTGVIY SNQPEAEKMAAYQCDVTYATNNELGFDYLRDNMKPSLDQVFQKQHNFAIVDEVDSILIDEARTPLIISGPAEDRSELYET IDKLIPTLDEGHYEIDEKTRGVTFTDEGNEFLEESLLKAGLLEEGASLYDPESTTIVHHVNQALRAHKLFQRDKDYIVRD GNVVLIDEFTGRMMPGRRLSEGLHQAIEAKEGTDIQPENTTLASVTFQNYFRLYDKLSGMTGTAMTEAEEFAEIYGLGVV EVPTNRPIARIDEDDKVYRTANEKYAAMIAETKLAHEKGQPVLLGTTSIEKSELLSQLLQQEGIEHNVLNARHHEQEAKI VAEAGRLGAVTIATNMAGRGTDIQLGGNIDLKVMEALEANPDADPAVLRAEEEAKHAEEKQKVLEAGGLYVMASERHESR RIDNQLRGRSGRQGDPGRTSFYLSLEDDLMRIFGSERLDKLLSGLGMKEGEAIIHPWVNKSLERAQAKVEGRNFDMRKNV LKFDDVMNDQRKVVFAQRREIMASDDTHEIVTDMRHEVIDDLIDIYMPPKTYADQWDTQGLQDDVREKLNIDAPVVEWAA EEGVDDEQIRERLVEASDKLMAEKVEAFGQEGMSNIEKQVLLQTIDAKWREHLLTLEHLRSVVGFRGYAQRDPLNEYKNE SFQLFESMLDSLRETVTQQLSRVRPLSEEEQREMMMQMAARQGMQRAAAPAAEPVEAPKEGFVEDDPSTWGNPSRNDKCP CGSGKKFKHCHGRLG >Mature_895_residues MLGIGTLAKKVFGTPNDRKIKATRPLIAKINALEPEFEALSDQGIKDKTEDLRKRALAGESLDDLLPEAFANVREAARRA LGLRAFDTQLMGGTFLHQGNISEMKTGEGKTLVATFPAYLNALTGKGVHVVTVNEYLAKRDSEWMSKVFGALGMTTGVIY SNQPEAEKMAAYQCDVTYATNNELGFDYLRDNMKPSLDQVFQKQHNFAIVDEVDSILIDEARTPLIISGPAEDRSELYET IDKLIPTLDEGHYEIDEKTRGVTFTDEGNEFLEESLLKAGLLEEGASLYDPESTTIVHHVNQALRAHKLFQRDKDYIVRD GNVVLIDEFTGRMMPGRRLSEGLHQAIEAKEGTDIQPENTTLASVTFQNYFRLYDKLSGMTGTAMTEAEEFAEIYGLGVV EVPTNRPIARIDEDDKVYRTANEKYAAMIAETKLAHEKGQPVLLGTTSIEKSELLSQLLQQEGIEHNVLNARHHEQEAKI VAEAGRLGAVTIATNMAGRGTDIQLGGNIDLKVMEALEANPDADPAVLRAEEEAKHAEEKQKVLEAGGLYVMASERHESR RIDNQLRGRSGRQGDPGRTSFYLSLEDDLMRIFGSERLDKLLSGLGMKEGEAIIHPWVNKSLERAQAKVEGRNFDMRKNV LKFDDVMNDQRKVVFAQRREIMASDDTHEIVTDMRHEVIDDLIDIYMPPKTYADQWDTQGLQDDVREKLNIDAPVVEWAA EEGVDDEQIRERLVEASDKLMAEKVEAFGQEGMSNIEKQVLLQTIDAKWREHLLTLEHLRSVVGFRGYAQRDPLNEYKNE SFQLFESMLDSLRETVTQQLSRVRPLSEEEQREMMMQMAARQGMQRAAAPAAEPVEAPKEGFVEDDPSTWGNPSRNDKCP CGSGKKFKHCHGRLG
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity)
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family
Homologues:
Organism=Escherichia coli, GI1786287, Length=912, Percent_Identity=52.6315789473684, Blast_Score=931, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SECA_SILST (Q1GCG7)
Other databases:
- EMBL: CP000377 - RefSeq: YP_614911.1 - ProteinModelPortal: Q1GCG7 - SMR: Q1GCG7 - STRING: Q1GCG7 - GeneID: 4078595 - GenomeReviews: CP000377_GR - KEGG: sit:TM1040_2917 - NMPDR: fig|292414.1.peg.1814 - eggNOG: COG0653 - HOGENOM: HBG284200 - OMA: GGMVLHD - PhylomeDB: Q1GCG7 - ProtClustDB: PRK12904 - BioCyc: SSP292414:TM1040_2917-MONOMER - GO: GO:0005737 - HAMAP: MF_01382 - InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 - Gene3D: G3DSA:1.10.3060.10 - PRINTS: PR00906 - SMART: SM00957 - SMART: SM00958 - TIGRFAMs: TIGR00963
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW; SSF81767 SecA_PP_bd; SSF81886 SecA_SW
EC number: NA
Molecular weight: Translated: 100452; Mature: 100452
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS01312 SECA; PS51196 SECA_MOTOR_DEAD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGIGTLAKKVFGTPNDRKIKATRPLIAKINALEPEFEALSDQGIKDKTEDLRKRALAGE CCCHHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHCCC SLDDLLPEAFANVREAARRALGLRAFDTQLMGGTFLHQGNISEMKTGEGKTLVATFPAYL CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCHHHCCCCCCCEEEEEHHHHH NALTGKGVHVVTVNEYLAKRDSEWMSKVFGALGMTTGVIYSNQPEAEKMAAYQCDVTYAT HHHCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHCEEECCCCCHHHHHHEEEEEEEEC NNELGFDYLRDNMKPSLDQVFQKQHNFAIVDEVDSILIDEARTPLIISGPAEDRSELYET CCCCCHHHHHCCCCCCHHHHHHHHCCEEEHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH IDKLIPTLDEGHYEIDEKTRGVTFTDEGNEFLEESLLKAGLLEEGASLYDPESTTIVHHV HHHHCCCCCCCCEEECCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH NQALRAHKLFQRDKDYIVRDGNVVLIDEFTGRMMPGRRLSEGLHQAIEAKEGTDIQPENT HHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC TLASVTFQNYFRLYDKLSGMTGTAMTEAEEFAEIYGLGVVEVPTNRPIARIDEDDKVYRT EEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHH ANEKYAAMIAETKLAHEKGQPVLLGTTSIEKSELLSQLLQQEGIEHNVLNARHHEQEAKI CCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VAEAGRLGAVTIATNMAGRGTDIQLGGNIDLKVMEALEANPDADPAVLRAEEEAKHAEEK HHHCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCCCCHHHEECHHHHHHHHHH QKVLEAGGLYVMASERHESRRIDNQLRGRSGRQGDPGRTSFYLSLEDDLMRIFGSERLDK HHHHHHCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHCHHHHHH LLSGLGMKEGEAIIHPWVNKSLERAQAKVEGRNFDMRKNVLKFDDVMNDQRKVVFAQRRE HHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH IMASDDTHEIVTDMRHEVIDDLIDIYMPPKTYADQWDTQGLQDDVREKLNIDAPVVEWAA HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHCCCCHHHHHHH EEGVDDEQIRERLVEASDKLMAEKVEAFGQEGMSNIEKQVLLQTIDAKWREHLLTLEHLR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVVGFRGYAQRDPLNEYKNESFQLFESMLDSLRETVTQQLSRVRPLSEEEQREMMMQMAA HHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH RQGMQRAAAPAAEPVEAPKEGFVEDDPSTWGNPSRNDKCPCGSGKKFKHCHGRLG HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC >Mature Secondary Structure MLGIGTLAKKVFGTPNDRKIKATRPLIAKINALEPEFEALSDQGIKDKTEDLRKRALAGE CCCHHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHCCC SLDDLLPEAFANVREAARRALGLRAFDTQLMGGTFLHQGNISEMKTGEGKTLVATFPAYL CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCHHHCCCCCCCEEEEEHHHHH NALTGKGVHVVTVNEYLAKRDSEWMSKVFGALGMTTGVIYSNQPEAEKMAAYQCDVTYAT HHHCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHCEEECCCCCHHHHHHEEEEEEEEC NNELGFDYLRDNMKPSLDQVFQKQHNFAIVDEVDSILIDEARTPLIISGPAEDRSELYET CCCCCHHHHHCCCCCCHHHHHHHHCCEEEHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH IDKLIPTLDEGHYEIDEKTRGVTFTDEGNEFLEESLLKAGLLEEGASLYDPESTTIVHHV HHHHCCCCCCCCEEECCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH NQALRAHKLFQRDKDYIVRDGNVVLIDEFTGRMMPGRRLSEGLHQAIEAKEGTDIQPENT HHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC TLASVTFQNYFRLYDKLSGMTGTAMTEAEEFAEIYGLGVVEVPTNRPIARIDEDDKVYRT EEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHH ANEKYAAMIAETKLAHEKGQPVLLGTTSIEKSELLSQLLQQEGIEHNVLNARHHEQEAKI CCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VAEAGRLGAVTIATNMAGRGTDIQLGGNIDLKVMEALEANPDADPAVLRAEEEAKHAEEK HHHCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCCCCHHHEECHHHHHHHHHH QKVLEAGGLYVMASERHESRRIDNQLRGRSGRQGDPGRTSFYLSLEDDLMRIFGSERLDK HHHHHHCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHCHHHHHH LLSGLGMKEGEAIIHPWVNKSLERAQAKVEGRNFDMRKNVLKFDDVMNDQRKVVFAQRRE HHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH IMASDDTHEIVTDMRHEVIDDLIDIYMPPKTYADQWDTQGLQDDVREKLNIDAPVVEWAA HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHCCCCHHHHHHH EEGVDDEQIRERLVEASDKLMAEKVEAFGQEGMSNIEKQVLLQTIDAKWREHLLTLEHLR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVVGFRGYAQRDPLNEYKNESFQLFESMLDSLRETVTQQLSRVRPLSEEEQREMMMQMAA HHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH RQGMQRAAAPAAEPVEAPKEGFVEDDPSTWGNPSRNDKCPCGSGKKFKHCHGRLG HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA