Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082758

Identifier: 99082758

GI number: 99082758

Start: 3088030

End: 3088926

Strand: Direct

Name: 99082758

Synonym: TM1040_2918

Alternate gene names: NA

Gene position: 3088030-3088926 (Clockwise)

Preceding gene: 99082757

Following gene: 99082759

Centisome position: 96.47

GC content: 58.08

Gene sequence:

>897_bases
ATGGGTATTCGAGTTACGGGTCTTATTGCGGTTGCTACTGTCATCTGCGCCTTGGGCACGGGCGTCTATATGCAGCGTAC
TGCAGATTTGCAGCGTGCGCCGAGCGCGCAGCAGGCCTCCGCACCGCTTCCGACGGAACCTGAAACCGGAAAACTTGTTC
TTCAGGATGTGACGTTCACCTCCGCAAGACCGGATACGCACCGACGACGTCAGCCGCTGCGGGACGTGGATACATCGCTC
TTGCAATGTGCGAGCACTTTGAACCTCACTGCGATCGACAACGCGATGCTTCAGGTCGAGCTTTCCGCCCCTTGCCGGGC
GGGAGAGCGTTTTACGCTGCACCATGGCGGCGTGATGGTGACTTACGCGCTTGATGCTGAAGGGGATTTTCGCGGTGTTT
TGCCTGCTTTTACGAAACGCGCCGTTGTTATTGCGGACTTCGCATCAGGGCGCGACCTTGATGCGTCTGTGATGGTCGAG
GATCTCGAACAGGTCGAGCGTGTCGTCATGCACTGGCAGGGCCGGAGCGGGCTTGAGCTTCACGCGCTGGAATTTGGCGC
GACCTATGGGAGCGCGGGCCATGTCTGGAAAGGCTCCGAACCGGGGCTAGGCGCGGGCGAGGTTCTGTTCCTAGGTGACC
CGGATCAGGTCGCTGCGCATCTTGTACAGGTTTACACGCTGCCCAAATCCTCCGGGTATGGCGCGGTCAACATTTCTGTC
GAAGCAGAAATTACCGATGCCAATTGTGATCAGGCTGTCGCGGCACAGTTGATCGAGCGGCGCGACGACAGACTGCGCAC
GCGGGATCTGGTGTTGAACATCCCCGATTGTTCGGCGGTTGGTGATTTTCTGGTGTTGAATAATCTCGTCGAAAGCCTGA
AAATCGCCTCCAACTAA

Upstream 100 bases:

>100_bases
GCAGACTGTGACACTGGCCGTCTTTCTTTCCGGCCTCTGCCACAGTCTGGCCACCCTGATGGGATACGAATCCTTAACCT
TTTCGGGTAAGGAGGGTGTT

Downstream 100 bases:

>100_bases
CTGGGGCGACACCGGGATTTCTCATGAGCTATTACCGTGCGGCGGTCTGCGCCGCACTCTGCTTTTTCAGCTTTGGCCAA
CCGGTTCTGGGACAGGATGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MGIRVTGLIAVATVICALGTGVYMQRTADLQRAPSAQQASAPLPTEPETGKLVLQDVTFTSARPDTHRRRQPLRDVDTSL
LQCASTLNLTAIDNAMLQVELSAPCRAGERFTLHHGGVMVTYALDAEGDFRGVLPAFTKRAVVIADFASGRDLDASVMVE
DLEQVERVVMHWQGRSGLELHALEFGATYGSAGHVWKGSEPGLGAGEVLFLGDPDQVAAHLVQVYTLPKSSGYGAVNISV
EAEITDANCDQAVAAQLIERRDDRLRTRDLVLNIPDCSAVGDFLVLNNLVESLKIASN

Sequences:

>Translated_298_residues
MGIRVTGLIAVATVICALGTGVYMQRTADLQRAPSAQQASAPLPTEPETGKLVLQDVTFTSARPDTHRRRQPLRDVDTSL
LQCASTLNLTAIDNAMLQVELSAPCRAGERFTLHHGGVMVTYALDAEGDFRGVLPAFTKRAVVIADFASGRDLDASVMVE
DLEQVERVVMHWQGRSGLELHALEFGATYGSAGHVWKGSEPGLGAGEVLFLGDPDQVAAHLVQVYTLPKSSGYGAVNISV
EAEITDANCDQAVAAQLIERRDDRLRTRDLVLNIPDCSAVGDFLVLNNLVESLKIASN
>Mature_297_residues
GIRVTGLIAVATVICALGTGVYMQRTADLQRAPSAQQASAPLPTEPETGKLVLQDVTFTSARPDTHRRRQPLRDVDTSLL
QCASTLNLTAIDNAMLQVELSAPCRAGERFTLHHGGVMVTYALDAEGDFRGVLPAFTKRAVVIADFASGRDLDASVMVED
LEQVERVVMHWQGRSGLELHALEFGATYGSAGHVWKGSEPGLGAGEVLFLGDPDQVAAHLVQVYTLPKSSGYGAVNISVE
AEITDANCDQAVAAQLIERRDDRLRTRDLVLNIPDCSAVGDFLVLNNLVESLKIASN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31978; Mature: 31846

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIRVTGLIAVATVICALGTGVYMQRTADLQRAPSAQQASAPLPTEPETGKLVLQDVTFT
CCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCEEEEEEEEC
SARPDTHRRRQPLRDVDTSLLQCASTLNLTAIDNAMLQVELSAPCRAGERFTLHHGGVMV
CCCCCHHHHHCCHHHHHHHHHHHHHHCCEEEECCEEEEEEECCCCCCCCEEEEECCCEEE
TYALDAEGDFRGVLPAFTKRAVVIADFASGRDLDASVMVEDLEQVERVVMHWQGRSGLEL
EEEECCCCCCCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
HALEFGATYGSAGHVWKGSEPGLGAGEVLFLGDPDQVAAHLVQVYTLPKSSGYGAVNISV
EEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHEECCCCCCCEEEEEEE
EAEITDANCDQAVAAQLIERRDDRLRTRDLVLNIPDCSAVGDFLVLNNLVESLKIASN
EEEEECCCCCHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GIRVTGLIAVATVICALGTGVYMQRTADLQRAPSAQQASAPLPTEPETGKLVLQDVTFT
CEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCEEEEEEEEC
SARPDTHRRRQPLRDVDTSLLQCASTLNLTAIDNAMLQVELSAPCRAGERFTLHHGGVMV
CCCCCHHHHHCCHHHHHHHHHHHHHHCCEEEECCEEEEEEECCCCCCCCEEEEECCCEEE
TYALDAEGDFRGVLPAFTKRAVVIADFASGRDLDASVMVEDLEQVERVVMHWQGRSGLEL
EEEECCCCCCCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
HALEFGATYGSAGHVWKGSEPGLGAGEVLFLGDPDQVAAHLVQVYTLPKSSGYGAVNISV
EEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHEECCCCCCCEEEEEEE
EAEITDANCDQAVAAQLIERRDDRLRTRDLVLNIPDCSAVGDFLVLNNLVESLKIASN
EEEEECCCCCHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA