| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is regB [H]
Identifier: 99082680
GI number: 99082680
Start: 3007508
End: 3008905
Strand: Direct
Name: regB [H]
Synonym: TM1040_2840
Alternate gene names: 99082680
Gene position: 3007508-3008905 (Clockwise)
Preceding gene: 99082676
Following gene: 99082681
Centisome position: 93.96
GC content: 58.23
Gene sequence:
>1398_bases ATGAGCGAGACCACCCTTGGGTTGATGAGCGGCCAGAAACGCAGCCATTGGGTGCGCCTGCGTACTCTGATCGTTTTGCG CTGGGTTGCAATCATTGGCCAGGCCACCGCAATTGGTGTTGCCCAGACCCAATATGACCTGCAGCTTTCGCTCTGGCCTT GCTATCTTGCAATCGGCGTTTCCGCCCTGGCCAACCTGGTGGCATGGATCGTTTTTCCTGAAAACAAGCGTCTGACGGAA TTTCAAAACTTCCTGATGGTTCTCTTTGATCTGCTGCAGCTGTGCTTTCTGCTGTACATGACCGGAGGGCTCAACAATCC ATTTGCCCTTCTGGTGCTGGGGCCTGTGACCGTTTCCGCCTCGGTGATGCGATTGCGCTCGACGCTGATTATCGGGACAA GCGCCGTCATTCTCGTGACGCTATTGGTTCCGTGGCATGTGCCGCTTCAAACAGCCGCAGGTGAAATCCTGAAGATGCCC GTGCTTTTTGTGTTTGGTCACTGGTGTGCTTTGGTCATCGCGATCCTGTTCATGGGGGCCTATTCCTATCGCATCAGTGC AGAAATTCGCTCCATGTCCGATGCGCTTGCCGCGACGCAGCTGGCACTCTCTCGCGAGCAGAAACTGACAGACCTCGGTG GAGTCGTTGCCGCCGCCGCGCATGAGTTGGGCACCCCTTTGGCCACTATTAAGCTAACGAGTTCAGAACTTATCGAAGAG CTGGACCAAAATCCGGAACTACAAGACGACGCGCGCCTCATCCGCGAACAGGCCGACCGCTGCCGCGATATCCTGCGCAG CATGGGACGGGCAGGCAAGGATGACCTGCACCTGCGCCAGACGCCTCTGTCAGCACTGGTACATGAAGCGGCCGAACCAC ATTTTGAGCGTGGCAAGGAAATCCGACTGAGCGAGCACCCCGCCGAGGGTGACGCTCTGAACCAGCCAAGTGTTCTGCGC AAACCCGAGATCATTCACGGGCTGCGCAACCTCGTACAAAACGCCGTTGATTTTGCGCAGTCAAAAGTCTGGATCGAACT GCACTGGAGCGCAGAGACCATCACCGTGCGGATCAGCGATGATGGCAACGGGTTCCCGGGACATTTGATCGGGCGTTTGG GGGACCCTTTCATGCGCCGCCGCGCCCCCCACGCAGAGCGCGGCAACCGCCCGGAGTACGAAGGCATGGGGCTTGGCCTG TTTATCGCCAAGACCCTGCTGGAGCGCACAGGGGCACGGCTGAAATTCCTGAACGGTCGTGATGTCGCCATGTCGCCGGA CCTCTCGCCGGCACAAAGGGGCGCTCTGGTGATCGTGACATGGCCCCGGCGCAAGATCGATGCCGTAAGCGGTGACACCC CTGTGCCGACCGGAGAAAATATTCCGATACAGTTTTAA
Upstream 100 bases:
>100_bases CCTGAACGGGTCGAGGCACAGGGAAGTCGCACCTCTGTTGATCCCGGTTGGCGCTAGACCTATCAACAATTACCGGTGAT GCAACGGGAGCAAACGTCAC
Downstream 100 bases:
>100_bases CTATTCACTTTTGGGAAACCAGTTAAACTTCACTTAACCATTGTCATGGAAACTCAACGCAAGGAGAAATAGCGAGGCTG TGTCCATGCAAGAATTGATG
Product: periplasmic sensor signal transduction histidine kinase
Products: NA
Alternate protein names: Protein prrB [H]
Number of amino acids: Translated: 465; Mature: 464
Protein sequence:
>465_residues MSETTLGLMSGQKRSHWVRLRTLIVLRWVAIIGQATAIGVAQTQYDLQLSLWPCYLAIGVSALANLVAWIVFPENKRLTE FQNFLMVLFDLLQLCFLLYMTGGLNNPFALLVLGPVTVSASVMRLRSTLIIGTSAVILVTLLVPWHVPLQTAAGEILKMP VLFVFGHWCALVIAILFMGAYSYRISAEIRSMSDALAATQLALSREQKLTDLGGVVAAAAHELGTPLATIKLTSSELIEE LDQNPELQDDARLIREQADRCRDILRSMGRAGKDDLHLRQTPLSALVHEAAEPHFERGKEIRLSEHPAEGDALNQPSVLR KPEIIHGLRNLVQNAVDFAQSKVWIELHWSAETITVRISDDGNGFPGHLIGRLGDPFMRRRAPHAERGNRPEYEGMGLGL FIAKTLLERTGARLKFLNGRDVAMSPDLSPAQRGALVIVTWPRRKIDAVSGDTPVPTGENIPIQF
Sequences:
>Translated_465_residues MSETTLGLMSGQKRSHWVRLRTLIVLRWVAIIGQATAIGVAQTQYDLQLSLWPCYLAIGVSALANLVAWIVFPENKRLTE FQNFLMVLFDLLQLCFLLYMTGGLNNPFALLVLGPVTVSASVMRLRSTLIIGTSAVILVTLLVPWHVPLQTAAGEILKMP VLFVFGHWCALVIAILFMGAYSYRISAEIRSMSDALAATQLALSREQKLTDLGGVVAAAAHELGTPLATIKLTSSELIEE LDQNPELQDDARLIREQADRCRDILRSMGRAGKDDLHLRQTPLSALVHEAAEPHFERGKEIRLSEHPAEGDALNQPSVLR KPEIIHGLRNLVQNAVDFAQSKVWIELHWSAETITVRISDDGNGFPGHLIGRLGDPFMRRRAPHAERGNRPEYEGMGLGL FIAKTLLERTGARLKFLNGRDVAMSPDLSPAQRGALVIVTWPRRKIDAVSGDTPVPTGENIPIQF >Mature_464_residues SETTLGLMSGQKRSHWVRLRTLIVLRWVAIIGQATAIGVAQTQYDLQLSLWPCYLAIGVSALANLVAWIVFPENKRLTEF QNFLMVLFDLLQLCFLLYMTGGLNNPFALLVLGPVTVSASVMRLRSTLIIGTSAVILVTLLVPWHVPLQTAAGEILKMPV LFVFGHWCALVIAILFMGAYSYRISAEIRSMSDALAATQLALSREQKLTDLGGVVAAAAHELGTPLATIKLTSSELIEEL DQNPELQDDARLIREQADRCRDILRSMGRAGKDDLHLRQTPLSALVHEAAEPHFERGKEIRLSEHPAEGDALNQPSVLRK PEIIHGLRNLVQNAVDFAQSKVWIELHWSAETITVRISDDGNGFPGHLIGRLGDPFMRRRAPHAERGNRPEYEGMGLGLF IAKTLLERTGARLKFLNGRDVAMSPDLSPAQRGALVIVTWPRRKIDAVSGDTPVPTGENIPIQF
Specific function: Member of the two-component regulatory system RegB/RegA. Involved in the positive regulation of photosynthesis gene expression in response to anaerobiosis. Also involved in positive regulation of the cbbI and cbbII Calvin cycle CO2 fixation operons, as we
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 51383; Mature: 51251
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETTLGLMSGQKRSHWVRLRTLIVLRWVAIIGQATAIGVAQTQYDLQLSLWPCYLAIGV CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEEEEEEEHHHHHHHHHH SALANLVAWIVFPENKRLTEFQNFLMVLFDLLQLCFLLYMTGGLNNPFALLVLGPVTVSA HHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH SVMRLRSTLIIGTSAVILVTLLVPWHVPLQTAAGEILKMPVLFVFGHWCALVIAILFMGA HHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSYRISAEIRSMSDALAATQLALSREQKLTDLGGVVAAAAHELGTPLATIKLTSSELIEE HHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHH LDQNPELQDDARLIREQADRCRDILRSMGRAGKDDLHLRQTPLSALVHEAAEPHFERGKE HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCHHHCCCE IRLSEHPAEGDALNQPSVLRKPEIIHGLRNLVQNAVDFAQSKVWIELHWSAETITVRISD EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCEEEEEEECC DGNGFPGHLIGRLGDPFMRRRAPHAERGNRPEYEGMGLGLFIAKTLLERTGARLKFLNGR CCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCC DVAMSPDLSPAQRGALVIVTWPRRKIDAVSGDTPVPTGENIPIQF CCEECCCCCHHHCCCEEEEECCCCHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SETTLGLMSGQKRSHWVRLRTLIVLRWVAIIGQATAIGVAQTQYDLQLSLWPCYLAIGV CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEEEEEEEHHHHHHHHHH SALANLVAWIVFPENKRLTEFQNFLMVLFDLLQLCFLLYMTGGLNNPFALLVLGPVTVSA HHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH SVMRLRSTLIIGTSAVILVTLLVPWHVPLQTAAGEILKMPVLFVFGHWCALVIAILFMGA HHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSYRISAEIRSMSDALAATQLALSREQKLTDLGGVVAAAAHELGTPLATIKLTSSELIEE HHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHH LDQNPELQDDARLIREQADRCRDILRSMGRAGKDDLHLRQTPLSALVHEAAEPHFERGKE HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCHHHCCCE IRLSEHPAEGDALNQPSVLRKPEIIHGLRNLVQNAVDFAQSKVWIELHWSAETITVRISD EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCEEEEEEECC DGNGFPGHLIGRLGDPFMRRRAPHAERGNRPEYEGMGLGLFIAKTLLERTGARLKFLNGR CCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCC DVAMSPDLSPAQRGALVIVTWPRRKIDAVSGDTPVPTGENIPIQF CCEECCCCCHHHCCCEEEEECCCCHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7751278; 10358089 [H]