Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082673

Identifier: 99082673

GI number: 99082673

Start: 3001480

End: 3001875

Strand: Direct

Name: 99082673

Synonym: TM1040_2833

Alternate gene names: NA

Gene position: 3001480-3001875 (Clockwise)

Preceding gene: 99082672

Following gene: 99082676

Centisome position: 93.77

GC content: 56.57

Gene sequence:

>396_bases
ATGGAAATTCTCAGCGTAATTGCCGCGACCATCGCGGCCTTTGTTGCGGGCGCGGCCTATTATGGTGCGCTGGCTGAGCC
TTGGATGGCGGCATCAGGCGTCGAACGAGATGAAAACGGCAAACCCAAAGGCGGCCAGAATCCAAGTGTTTTTGCCTTTG
CCTTCCTTTGCCAACTGGTTGTTGCGGGCATGATGCGCCATGTCTTCAGCCTCTCTGGGATTGAAACACTCGGTGCAGGG
CTTCTCGCTGGAATGGGCGTGGGGCTGTTCTTCATCACCCCCTGGATCGCGCTTAACAATCTCTACGGCATGAGGCCACG
TCAGCTGACCATTATCGACGGTGGATATGCAAGCCTCGCCTGCAGCATCATGGGAGCGGTTCTGGCGCTGATATGA

Upstream 100 bases:

>100_bases
CGGAGTGGCAAGAGATCTGCAAGATGGGGGATACACCTGCAGATTGACCCGGCGAGCAAAACTGGCATGCTGACTCTGAC
AAATGTCTGCGAGGAATGGC

Downstream 100 bases:

>100_bases
CTCTGAGTGTTGTACCAAAGCAAAAGGCCGCTGCTGATGCCGCGGCCTTTTCCCACTCAACGCCCACTCCCAAAGCGATC
GCCAGTGATACTCGCAATAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MEILSVIAATIAAFVAGAAYYGALAEPWMAASGVERDENGKPKGGQNPSVFAFAFLCQLVVAGMMRHVFSLSGIETLGAG
LLAGMGVGLFFITPWIALNNLYGMRPRQLTIIDGGYASLACSIMGAVLALI

Sequences:

>Translated_131_residues
MEILSVIAATIAAFVAGAAYYGALAEPWMAASGVERDENGKPKGGQNPSVFAFAFLCQLVVAGMMRHVFSLSGIETLGAG
LLAGMGVGLFFITPWIALNNLYGMRPRQLTIIDGGYASLACSIMGAVLALI
>Mature_131_residues
MEILSVIAATIAAFVAGAAYYGALAEPWMAASGVERDENGKPKGGQNPSVFAFAFLCQLVVAGMMRHVFSLSGIETLGAG
LLAGMGVGLFFITPWIALNNLYGMRPRQLTIIDGGYASLACSIMGAVLALI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13616; Mature: 13616

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILSVIAATIAAFVAGAAYYGALAEPWMAASGVERDENGKPKGGQNPSVFAFAFLCQLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAGMMRHVFSLSGIETLGAGLLAGMGVGLFFITPWIALNNLYGMRPRQLTIIDGGYASLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH
CSIMGAVLALI
HHHHHHHHHHC
>Mature Secondary Structure
MEILSVIAATIAAFVAGAAYYGALAEPWMAASGVERDENGKPKGGQNPSVFAFAFLCQLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAGMMRHVFSLSGIETLGAGLLAGMGVGLFFITPWIALNNLYGMRPRQLTIIDGGYASLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH
CSIMGAVLALI
HHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA