| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is amn [H]
Identifier: 99082640
GI number: 99082640
Start: 2962121
End: 2963587
Strand: Direct
Name: amn [H]
Synonym: TM1040_2800
Alternate gene names: 99082640
Gene position: 2962121-2963587 (Clockwise)
Preceding gene: 99082639
Following gene: 99082641
Centisome position: 92.54
GC content: 58.83
Gene sequence:
>1467_bases ATGAATGATGTAAAAACACCCGACCTGCCCGCTGCCGAAAGCTTTACCGACGCCAAAGCGGCCGTAGCGCGCCTGATTGA GCTCTACGATAGCGCAACCAATTTTCTCTGTGACGAGTTTATTGCCGCGATGAGCGCCGGAGCTGCGCCGAGCAGCCGCA TGCGAGCCTACTATCCCGAAGTGCGCTTCACCACCACGACCTACGCGCAGGTGGACAGTCGCCTGAGCTTTGGTCATGTG GCCGATCCCGGCATCTATTCCACCACCGTCACACGGCCCGATCTGTTTCGTCATTACCTGGAGCAGCAAATCGGGTTGCT GATCAAGAACCACGACCAGCCGGTGACAGTGGGGGTATCGCAAACGCCGATGCCAGTGCATTTTGCCGTCGCCTCGCGCC CGGGACTGACAGTACCGCAGGAGGGCGCCGCGCGCTTCACCCTGCGCGATGTCTTTGATGTGCCGGATCTCGCCACAACA AACGACGACATCGTAAATGGCACCTATGTGCCCGAAAACGGTGTCGGTCCGCTGTCGCTCTTTACCGCCCAGCGCGTCGA CTACTCTCTGGCGCGTCTGTCACACTATACCGCGACCGACCCGGAGCATTTCCAGAACCATGTGTTGTTCACCAACTACC AGTTCTACGTGACAGAGTTCGAAGCCTATGCGCGCGAACAACTGGCCGATCCAGACAGCGGCTACACCAGTTTTGTCTCC ACCGGAAACGTCGAGATCACCAAAGCGGATGGAGAGCTGCCAGCATCGCTCAAAATGCCGCAGATGCCGACTTACCACCT GAAACGCCCCGACGGAAACGGCATCACACTGGTCAACATTGGCGTTGGCCCGTCAAACGCGAAAACCGCAACCGATCACA TTGCGGTCCTGCGCCCACACGCCTGGCTGATGGTGGGCCATTGTGCGGGTCTGAGGAACTCTCAGGCATTGGGAGATTTT GTGCTTGCTCATGCCTATCTGCGCGAGGATCACGTTCTGGATGACGACCTGCCGGTCTGGGTACCGATCCCGGCATTGGC AGAAATTCAGGTCGCGCTCGAGGAAGCCGTGGCAGAGGAAACCGGACTCGAAGGCTATGATCTCAAGCGGATCATGCGGA CTGGCACCGTTGCAAGCCACGACAACCGCAACTGGGAACTGCGCGACCAGTCTGGTCCCGTGCAACGTCTGAGCCAATCC CGTGCGATTGCTCTTGATATGGAGAGCGCCACCATCGCCGCCAATGGCTATCGGTTCCGGGTTCCCTACGGCACGCTCCT GTGCATTTCCGACAAGCCCCTGCACGGTGAATTGAAGCTGCCCGGCATGGCGTCCGATTTCTATCGCACGCAGGTGTCGC GGCATCTGCTGATCGGGATCAAGGCAATGGAGCGACTGAGAACAATGCCGCTCGAGCGTCTCCACAGCCGGAAACTGCGC TCTTTTGACGAAACGGCCTTCCTGTAA
Upstream 100 bases:
>100_bases TCTCTCTTGGCACTTGTGGTGATCCCGGAACTGCGGATCAGCGATCTTGGCCTTGTAGACGTGCGTAGTTTCAAGAAAAT TCCAGTAATCGAGCCGTTCA
Downstream 100 bases:
>100_bases AGGCGAAAATATGCTGTTTTCCACGGAAAATTGCTTGTTTGGCGCTTGATCTTGTGCGCTACGCGTTGTGTTGTCCCACT ACATAACGCTAATGTTACGC
Product: AMP nucleosidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 488; Mature: 488
Protein sequence:
>488_residues MNDVKTPDLPAAESFTDAKAAVARLIELYDSATNFLCDEFIAAMSAGAAPSSRMRAYYPEVRFTTTTYAQVDSRLSFGHV ADPGIYSTTVTRPDLFRHYLEQQIGLLIKNHDQPVTVGVSQTPMPVHFAVASRPGLTVPQEGAARFTLRDVFDVPDLATT NDDIVNGTYVPENGVGPLSLFTAQRVDYSLARLSHYTATDPEHFQNHVLFTNYQFYVTEFEAYAREQLADPDSGYTSFVS TGNVEITKADGELPASLKMPQMPTYHLKRPDGNGITLVNIGVGPSNAKTATDHIAVLRPHAWLMVGHCAGLRNSQALGDF VLAHAYLREDHVLDDDLPVWVPIPALAEIQVALEEAVAEETGLEGYDLKRIMRTGTVASHDNRNWELRDQSGPVQRLSQS RAIALDMESATIAANGYRFRVPYGTLLCISDKPLHGELKLPGMASDFYRTQVSRHLLIGIKAMERLRTMPLERLHSRKLR SFDETAFL
Sequences:
>Translated_488_residues MNDVKTPDLPAAESFTDAKAAVARLIELYDSATNFLCDEFIAAMSAGAAPSSRMRAYYPEVRFTTTTYAQVDSRLSFGHV ADPGIYSTTVTRPDLFRHYLEQQIGLLIKNHDQPVTVGVSQTPMPVHFAVASRPGLTVPQEGAARFTLRDVFDVPDLATT NDDIVNGTYVPENGVGPLSLFTAQRVDYSLARLSHYTATDPEHFQNHVLFTNYQFYVTEFEAYAREQLADPDSGYTSFVS TGNVEITKADGELPASLKMPQMPTYHLKRPDGNGITLVNIGVGPSNAKTATDHIAVLRPHAWLMVGHCAGLRNSQALGDF VLAHAYLREDHVLDDDLPVWVPIPALAEIQVALEEAVAEETGLEGYDLKRIMRTGTVASHDNRNWELRDQSGPVQRLSQS RAIALDMESATIAANGYRFRVPYGTLLCISDKPLHGELKLPGMASDFYRTQVSRHLLIGIKAMERLRTMPLERLHSRKLR SFDETAFL >Mature_488_residues MNDVKTPDLPAAESFTDAKAAVARLIELYDSATNFLCDEFIAAMSAGAAPSSRMRAYYPEVRFTTTTYAQVDSRLSFGHV ADPGIYSTTVTRPDLFRHYLEQQIGLLIKNHDQPVTVGVSQTPMPVHFAVASRPGLTVPQEGAARFTLRDVFDVPDLATT NDDIVNGTYVPENGVGPLSLFTAQRVDYSLARLSHYTATDPEHFQNHVLFTNYQFYVTEFEAYAREQLADPDSGYTSFVS TGNVEITKADGELPASLKMPQMPTYHLKRPDGNGITLVNIGVGPSNAKTATDHIAVLRPHAWLMVGHCAGLRNSQALGDF VLAHAYLREDHVLDDDLPVWVPIPALAEIQVALEEAVAEETGLEGYDLKRIMRTGTVASHDNRNWELRDQSGPVQRLSQS RAIALDMESATIAANGYRFRVPYGTLLCISDKPLHGELKLPGMASDFYRTQVSRHLLIGIKAMERLRTMPLERLHSRKLR SFDETAFL
Specific function: Involved in regulation of AMP concentrations [H]
COG id: COG0775
COG function: function code F; Nucleoside phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788293, Length=479, Percent_Identity=49.0605427974948, Blast_Score=412, Evalue=1e-116,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011271 - InterPro: IPR018953 - InterPro: IPR018017 - InterPro: IPR000845 [H]
Pfam domain/function: PF10423 AMNp_N; PF01048 PNP_UDP_1 [H]
EC number: =3.2.2.4 [H]
Molecular weight: Translated: 54070; Mature: 54070
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDVKTPDLPAAESFTDAKAAVARLIELYDSATNFLCDEFIAAMSAGAAPSSRMRAYYPE CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCC VRFTTTTYAQVDSRLSFGHVADPGIYSTTVTRPDLFRHYLEQQIGLLIKNHDQPVTVGVS EEEEEEHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCEEEECCCCCEEEECC QTPMPVHFAVASRPGLTVPQEGAARFTLRDVFDVPDLATTNDDIVNGTYVPENGVGPLSL CCCCCEEEEEECCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHH FTAQRVDYSLARLSHYTATDPEHFQNHVLFTNYQFYVTEFEAYAREQLADPDSGYTSFVS HHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEEEEEEHHHHHHHHHCCCCCCCCCCEEE TGNVEITKADGELPASLKMPQMPTYHLKRPDGNGITLVNIGVGPSNAKTATDHIAVLRPH CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCEEEEECCC AWLMVGHCAGLRNSQALGDFVLAHAYLREDHVLDDDLPVWVPIPALAEIQVALEEAVAEE EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHH TGLEGYDLKRIMRTGTVASHDNRNWELRDQSGPVQRLSQSRAIALDMESATIAANGYRFR CCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHCCCEEEEEECCCEEEECCEEEE VPYGTLLCISDKPLHGELKLPGMASDFYRTQVSRHLLIGIKAMERLRTMPLERLHSRKLR CCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH SFDETAFL CCHHHCCC >Mature Secondary Structure MNDVKTPDLPAAESFTDAKAAVARLIELYDSATNFLCDEFIAAMSAGAAPSSRMRAYYPE CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCC VRFTTTTYAQVDSRLSFGHVADPGIYSTTVTRPDLFRHYLEQQIGLLIKNHDQPVTVGVS EEEEEEHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCEEEECCCCCEEEECC QTPMPVHFAVASRPGLTVPQEGAARFTLRDVFDVPDLATTNDDIVNGTYVPENGVGPLSL CCCCCEEEEEECCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHH FTAQRVDYSLARLSHYTATDPEHFQNHVLFTNYQFYVTEFEAYAREQLADPDSGYTSFVS HHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEEEEEEHHHHHHHHHCCCCCCCCCCEEE TGNVEITKADGELPASLKMPQMPTYHLKRPDGNGITLVNIGVGPSNAKTATDHIAVLRPH CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCEEEEECCC AWLMVGHCAGLRNSQALGDFVLAHAYLREDHVLDDDLPVWVPIPALAEIQVALEEAVAEE EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHH TGLEGYDLKRIMRTGTVASHDNRNWELRDQSGPVQRLSQSRAIALDMESATIAANGYRFR CCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHCCCEEEEEECCCEEEECCEEEE VPYGTLLCISDKPLHGELKLPGMASDFYRTQVSRHLLIGIKAMERLRTMPLERLHSRKLR CCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH SFDETAFL CCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]