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The map label for this gene is yfhH [C]

Identifier: 99082628

GI number: 99082628

Start: 2947896

End: 2948753

Strand: Direct

Name: yfhH [C]

Synonym: TM1040_2788

Alternate gene names: 99082628

Gene position: 2947896-2948753 (Clockwise)

Preceding gene: 99082620

Following gene: 99082629

Centisome position: 92.09

GC content: 55.83

Gene sequence:

>858_bases
ATGCCGACGATTGCCGAGAAACTGAAATCACGCGAATCTGACCTGACGCGTGCGGAACGGCAACTTTCGGCGGCGATCTT
GGACAACTATCCGATTCCCGGTCTTGGCAGCATCACAGAGCTTGCGGAACTGGCTGAGGTCTCGACGCCGACCGTCGCGC
GTATGGTGCAAAAACTGGGGTTCTCTGGCTATCCCGAATTTCAGCATGCCTTGCGCGAAGAATTGCGCGAAATCATCTCT
AACCCTGTGGAAAAAAGGGCAGAACAGGCGCCGGAGCTACCAGAAGGCCATATGCTTAATCGGTATGCTGTTGCGGTCTA
TGACAATATTCGCGCCACGCTGGAAAATGTGAACCTCGAGGAGTTCGACACGCTCTGTGCGCTTCTCGCGGACACCAATA
GTCGCGTACATATTGCCGGCGGGCGCCTGAGCGGAACGCTGGCACAGAACTTTTATCTGCACCTGCAGATGATCCGAAGA
GATGTCTTCATGATTCCGCCGCGCGCCTCCTGGACCCACTCGGTTCTGGACCTGCTTCCGGGCGATACGCTGATTCTCTT
TGACATCCGACGCTATGAGAACGCGACCCTTCTTCTGGCTGAGATGGCGCATGAACGCGGCGTGAAAGTGGTTCTGTTTA
CGGATCAGTGGCGCTCGCCAATTCAAAAAGAGGCAACATTCACCTTTGCCGCGCGCATCGCGGTGCCCTCGGCATGGGAT
TCAGGGGTCGCGCTTTTGTTGTTGATCGAAAGTATGATCGCCAAGATCCAAGAGGACCATTGGGACACCGTGAAGGCGCG
CAATGACGAGCTCGAAGCCGCCTTCGACCGTACACGCCTGTTTCGCAAATTCACCTGA

Upstream 100 bases:

>100_bases
TTCAGCCGACACCCTTCTGTCAATATACTTTCTGTAAAAATTCTTTCATCAACGCCCAACCTGTAATAAAATGCCAAAAA
CCCGAGCAGGAGAGCCGTGG

Downstream 100 bases:

>100_bases
GACCTGTTCGCCCGCCGCATTCATCGGTAGTTTGCCTCCCAACCGGGATGCACAGGCACAGCGATGACAGCGCGCAAGGA
CAGATTTCACCTCTCACCAG

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator RpiR Family; Transcriptional Regulator; SIS Domain Protein; N-Acylmannosamine Kinase; Transcriptional Regulator Protein RpiR Family; RpiR-Family Transcriptional Regulator; RpiR Family Transcriptional Regulatory Protein; Transcriptional Regulator Rpir Family; Helix-Turn-Helix Protein RpiR; N-Acetylmannosamine Kinase; Transcription Regulator RpiR Family; RpiR Family Regulatory; HTH Transcriptional Regulator Sugar Isomerasedomain; Transcriptional Regulator Protein; Transcription Regulator; Transcriptional Regulator Family Protein; SIS Domain-Containing Protein; HTH/SIS Domain-Containing Protein; RpiR Family Transcription Regulator

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MPTIAEKLKSRESDLTRAERQLSAAILDNYPIPGLGSITELAELAEVSTPTVARMVQKLGFSGYPEFQHALREELREIIS
NPVEKRAEQAPELPEGHMLNRYAVAVYDNIRATLENVNLEEFDTLCALLADTNSRVHIAGGRLSGTLAQNFYLHLQMIRR
DVFMIPPRASWTHSVLDLLPGDTLILFDIRRYENATLLLAEMAHERGVKVVLFTDQWRSPIQKEATFTFAARIAVPSAWD
SGVALLLLIESMIAKIQEDHWDTVKARNDELEAAFDRTRLFRKFT

Sequences:

>Translated_285_residues
MPTIAEKLKSRESDLTRAERQLSAAILDNYPIPGLGSITELAELAEVSTPTVARMVQKLGFSGYPEFQHALREELREIIS
NPVEKRAEQAPELPEGHMLNRYAVAVYDNIRATLENVNLEEFDTLCALLADTNSRVHIAGGRLSGTLAQNFYLHLQMIRR
DVFMIPPRASWTHSVLDLLPGDTLILFDIRRYENATLLLAEMAHERGVKVVLFTDQWRSPIQKEATFTFAARIAVPSAWD
SGVALLLLIESMIAKIQEDHWDTVKARNDELEAAFDRTRLFRKFT
>Mature_284_residues
PTIAEKLKSRESDLTRAERQLSAAILDNYPIPGLGSITELAELAEVSTPTVARMVQKLGFSGYPEFQHALREELREIISN
PVEKRAEQAPELPEGHMLNRYAVAVYDNIRATLENVNLEEFDTLCALLADTNSRVHIAGGRLSGTLAQNFYLHLQMIRRD
VFMIPPRASWTHSVLDLLPGDTLILFDIRRYENATLLLAEMAHERGVKVVLFTDQWRSPIQKEATFTFAARIAVPSAWDS
GVALLLLIESMIAKIQEDHWDTVKARNDELEAAFDRTRLFRKFT

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32287; Mature: 32156

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS00356 HTH_LACI_1 ; PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTIAEKLKSRESDLTRAERQLSAAILDNYPIPGLGSITELAELAEVSTPTVARMVQKLG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCC
FSGYPEFQHALREELREIISNPVEKRAEQAPELPEGHMLNRYAVAVYDNIRATLENVNLE
CCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
EFDTLCALLADTNSRVHIAGGRLSGTLAQNFYLHLQMIRRDVFMIPPRASWTHSVLDLLP
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCC
GDTLILFDIRRYENATLLLAEMAHERGVKVVLFTDQWRSPIQKEATFTFAARIAVPSAWD
CCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHCCCHHHHHHHHHHEEEECCCCCC
SGVALLLLIESMIAKIQEDHWDTVKARNDELEAAFDRTRLFRKFT
CHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PTIAEKLKSRESDLTRAERQLSAAILDNYPIPGLGSITELAELAEVSTPTVARMVQKLG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCC
FSGYPEFQHALREELREIISNPVEKRAEQAPELPEGHMLNRYAVAVYDNIRATLENVNLE
CCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
EFDTLCALLADTNSRVHIAGGRLSGTLAQNFYLHLQMIRRDVFMIPPRASWTHSVLDLLP
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCC
GDTLILFDIRRYENATLLLAEMAHERGVKVVLFTDQWRSPIQKEATFTFAARIAVPSAWD
CCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHCCCHHHHHHHHHHEEEECCCCCC
SGVALLLLIESMIAKIQEDHWDTVKARNDELEAAFDRTRLFRKFT
CHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA