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The map label for this gene is rpoE [H]

Identifier: 99082563

GI number: 99082563

Start: 2866340

End: 2866897

Strand: Direct

Name: rpoE [H]

Synonym: TM1040_2723

Alternate gene names: 99082563

Gene position: 2866340-2866897 (Clockwise)

Preceding gene: 99082561

Following gene: 99082564

Centisome position: 89.55

GC content: 58.78

Gene sequence:

>558_bases
ATGGACAGACAAAGCGCCAAGGCTGAATTGACCAGCCATATGAAGGTGCTGCGCGCCTTCGCCATGAGCCTGACCCGCAA
TGATGCGGCGGCGGATGATCTTGTACAGGACACGGTTCTCAAAGCGTGGAGCAACCTCGACAAGTTTCAGGAAGGCACCA
ACATGCGCGCCTGGCTCTTCACCATCCTGCGCAACACCTTTTACTCAGGCCGCCGCAAGGCAGTAAGAGAGGTGGAGGAT
TCCACCGGCAGCATCACCGAGAGCCTTTCGGTCAAACCCGCTCATGACGGACGTCTGCAACTGGAAGAGTTCCGGCGCGC
CTTGGGTGAATTGCCCGTGGAACAGCGCGAAATCCTGACTCTGATCGGAGTGCTGCAATATTCCTACGAAGAGGCCGCCG
AGGTCTGTGGCGTCAAGGTGGGCACCGTCAAAAGCCGTCTCAACCGGGGCCGTGAGGCGCTTGCAGCCAAGATGCAGTTG
GATGCGAATGAGCAGTTGGAACTGACCGATGCTGCCACCCACGCGGTTGTTGCAGCCAACAATGGGACTGCCGCGTGA

Upstream 100 bases:

>100_bases
TCTGATGGACCTACTTGACCGATTGGACAAGATCCCTGTCGCAGAGGGGTCGCAGGGCGCCCCAGATGCGTCCGCGTCTT
CTGGCGAGGAGGCCGATTAA

Downstream 100 bases:

>100_bases
ACCGAATGAACTTCCCGTCTCTCGCCCTCTTGAAGGGCGGGGACGCCCGCACGCACGAAACCTCGCTCTCTGAAGATCCG
ACCGCGCAGAACCGCGCGGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MDRQSAKAELTSHMKVLRAFAMSLTRNDAAADDLVQDTVLKAWSNLDKFQEGTNMRAWLFTILRNTFYSGRRKAVREVED
STGSITESLSVKPAHDGRLQLEEFRRALGELPVEQREILTLIGVLQYSYEEAAEVCGVKVGTVKSRLNRGREALAAKMQL
DANEQLELTDAATHAVVAANNGTAA

Sequences:

>Translated_185_residues
MDRQSAKAELTSHMKVLRAFAMSLTRNDAAADDLVQDTVLKAWSNLDKFQEGTNMRAWLFTILRNTFYSGRRKAVREVED
STGSITESLSVKPAHDGRLQLEEFRRALGELPVEQREILTLIGVLQYSYEEAAEVCGVKVGTVKSRLNRGREALAAKMQL
DANEQLELTDAATHAVVAANNGTAA
>Mature_185_residues
MDRQSAKAELTSHMKVLRAFAMSLTRNDAAADDLVQDTVLKAWSNLDKFQEGTNMRAWLFTILRNTFYSGRRKAVREVED
STGSITESLSVKPAHDGRLQLEEFRRALGELPVEQREILTLIGVLQYSYEEAAEVCGVKVGTVKSRLNRGREALAAKMQL
DANEQLELTDAATHAVVAANNGTAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20468; Mature: 20468

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS01063 SIGMA70_ECF ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRQSAKAELTSHMKVLRAFAMSLTRNDAAADDLVQDTVLKAWSNLDKFQEGTNMRAWLF
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TILRNTFYSGRRKAVREVEDSTGSITESLSVKPAHDGRLQLEEFRRALGELPVEQREILT
HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
LIGVLQYSYEEAAEVCGVKVGTVKSRLNRGREALAAKMQLDANEQLELTDAATHAVVAAN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHEEEECC
NGTAA
CCCCC
>Mature Secondary Structure
MDRQSAKAELTSHMKVLRAFAMSLTRNDAAADDLVQDTVLKAWSNLDKFQEGTNMRAWLF
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
TILRNTFYSGRRKAVREVEDSTGSITESLSVKPAHDGRLQLEEFRRALGELPVEQREILT
HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
LIGVLQYSYEEAAEVCGVKVGTVKSRLNRGREALAAKMQLDANEQLELTDAATHAVVAAN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHEEEECC
NGTAA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]