| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082561
Identifier: 99082561
GI number: 99082561
Start: 2864555
End: 2865052
Strand: Direct
Name: 99082561
Synonym: TM1040_2721
Alternate gene names: NA
Gene position: 2864555-2865052 (Clockwise)
Preceding gene: 99082560
Following gene: 99082563
Centisome position: 89.49
GC content: 58.23
Gene sequence:
>498_bases ATGTCAAACGCATTGAATGTTAAACCGCAGTTGGCCCCCGTCGAAACCGGCGTGCGCGACACCAAAGCGATCGCTGAAGG CCTGAGTGACGTTCTGGCGGACACCTACCGCCTCACGCTCAAGTCTCATATCTACCACTGGAATGTGGAGGGGCCACTGT TCTTCTCACTGCACAACCTCACCGAGGAGCAGTACCAGAACATGTTCGCCGCCGCCGACGAGCTGGCAGAGCGCATCCGC GCCCTCGGACATCTCACGCCGGGCAAGATCAACGGTGTTTTGTCCGACAGCATTGTCGACGACCTCGGTCAGATGCCCAG CGCAGGCGAGATGTGCAAGGATCTGGAACAAGACCATATGAAACTGGCGCACCGCCTGCATGCGCTCGTCGAACTTGCCG AAGAGCGCAAGGATATGGTGACCGGTGACCTTGCAACGGAACGCGCAGCGTTTCACGAAAAAGCAGCTTGGATGCTGCGG GCTTTGTCTGCCTCGTAA
Upstream 100 bases:
>100_bases CGTGATGTTTGTCGTCGCGCTGATATTGCGCGCGGTGCGTGGCTAACAGCCACAGTCACAGCAACCACATCACACAACCT CCCTTTGGAAAGGAGATACC
Downstream 100 bases:
>100_bases GCCAGCAGTGATCCAAATCCGCGCCCCACACGCCCTCTGGTGTGTGGGGCGCGGCTATTTTGAAATGTGGATTCTGAAAG CGCCGCATATGGCGGTCAGT
Product: Ferritin and Dps
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MSNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNLTEEQYQNMFAAADELAERIR ALGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHMKLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLR ALSAS
Sequences:
>Translated_165_residues MSNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNLTEEQYQNMFAAADELAERIR ALGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHMKLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLR ALSAS >Mature_164_residues SNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNLTEEQYQNMFAAADELAERIRA LGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHMKLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLRA LSAS
Specific function: Unknown
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 18293; Mature: 18162
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00818 DPS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNL CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH TEEQYQNMFAAADELAERIRALGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHM HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH KLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLRALSAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNL CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH TEEQYQNMFAAADELAERIRALGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHM HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH KLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLRALSAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]