Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082561

Identifier: 99082561

GI number: 99082561

Start: 2864555

End: 2865052

Strand: Direct

Name: 99082561

Synonym: TM1040_2721

Alternate gene names: NA

Gene position: 2864555-2865052 (Clockwise)

Preceding gene: 99082560

Following gene: 99082563

Centisome position: 89.49

GC content: 58.23

Gene sequence:

>498_bases
ATGTCAAACGCATTGAATGTTAAACCGCAGTTGGCCCCCGTCGAAACCGGCGTGCGCGACACCAAAGCGATCGCTGAAGG
CCTGAGTGACGTTCTGGCGGACACCTACCGCCTCACGCTCAAGTCTCATATCTACCACTGGAATGTGGAGGGGCCACTGT
TCTTCTCACTGCACAACCTCACCGAGGAGCAGTACCAGAACATGTTCGCCGCCGCCGACGAGCTGGCAGAGCGCATCCGC
GCCCTCGGACATCTCACGCCGGGCAAGATCAACGGTGTTTTGTCCGACAGCATTGTCGACGACCTCGGTCAGATGCCCAG
CGCAGGCGAGATGTGCAAGGATCTGGAACAAGACCATATGAAACTGGCGCACCGCCTGCATGCGCTCGTCGAACTTGCCG
AAGAGCGCAAGGATATGGTGACCGGTGACCTTGCAACGGAACGCGCAGCGTTTCACGAAAAAGCAGCTTGGATGCTGCGG
GCTTTGTCTGCCTCGTAA

Upstream 100 bases:

>100_bases
CGTGATGTTTGTCGTCGCGCTGATATTGCGCGCGGTGCGTGGCTAACAGCCACAGTCACAGCAACCACATCACACAACCT
CCCTTTGGAAAGGAGATACC

Downstream 100 bases:

>100_bases
GCCAGCAGTGATCCAAATCCGCGCCCCACACGCCCTCTGGTGTGTGGGGCGCGGCTATTTTGAAATGTGGATTCTGAAAG
CGCCGCATATGGCGGTCAGT

Product: Ferritin and Dps

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MSNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNLTEEQYQNMFAAADELAERIR
ALGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHMKLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLR
ALSAS

Sequences:

>Translated_165_residues
MSNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNLTEEQYQNMFAAADELAERIR
ALGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHMKLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLR
ALSAS
>Mature_164_residues
SNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNLTEEQYQNMFAAADELAERIRA
LGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHMKLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLRA
LSAS

Specific function: Unknown

COG id: COG0783

COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dps family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002177
- InterPro:   IPR023188
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR008331 [H]

Pfam domain/function: PF00210 Ferritin [H]

EC number: NA

Molecular weight: Translated: 18293; Mature: 18162

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS00818 DPS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNL
CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
TEEQYQNMFAAADELAERIRALGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLRALSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNALNVKPQLAPVETGVRDTKAIAEGLSDVLADTYRLTLKSHIYHWNVEGPLFFSLHNL
CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHH
TEEQYQNMFAAADELAERIRALGHLTPGKINGVLSDSIVDDLGQMPSAGEMCKDLEQDHM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KLAHRLHALVELAEERKDMVTGDLATERAAFHEKAAWMLRALSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]