Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082546

Identifier: 99082546

GI number: 99082546

Start: 2850143

End: 2850994

Strand: Direct

Name: 99082546

Synonym: TM1040_2706

Alternate gene names: NA

Gene position: 2850143-2850994 (Clockwise)

Preceding gene: 99082545

Following gene: 99082547

Centisome position: 89.04

GC content: 65.38

Gene sequence:

>852_bases
ATGCAGGCAGAGCAGCTTCGTGCATTTCTTGACGCCCCGGGCCCGGTTGCGAGCCTGCGGCTCACGAGGGTTCGCGGGTC
CTCTCCGCGCAACACGGGCACCGAGATGTATGTGCGTGCTGATGCGCTCTTTGGCACCATCGGCGGTGGGCAGCTCGAAC
ATCTCGCGATAGCGGAGGCGCGCAAGCTGCTAGCGGCAGGCAACCTCTCGGACCATCTGGACGTCCCCCTTGGCCCCGAG
ATCGGGCAATGCTGTGGCGGACGGGTGGAGATCGCGATCACCCGGATGAGTGCAAGCGACAAGGACGCCGCCCTGCGCGC
GACTGAAGCGCAGGATAACGCTCTGCCTGCTGTCTATATCCTCGGCGCGGGCCATGTGGGCCGCGCACTAGCGGATCTGC
TCCAGCATCTGCCGGTGCGCACAGTGCTGATCGACCAGCGTCAGGAAGAGCTGGACCAGTCGAGCGCGCAGGTCGAGCGC
CGCCAGAGCGCGATCCCCGAGATCGACGTGATGAATGCCCCCGAAGGCAGCGCCTTTATCGTGCTGACCCATGACCACGG
GCTGGATTTCTTGCTTACCTCTGCCGCCCTGCAACGGGGCGATGCCACCTATGTCGGCATGATCGGCTCTGCCACCAAGC
GGGCGAAATTCGCCAGCTGGACCCAAGACCACTGCGACGGGCTCTCTGTCGCAGATCTGATCTGCCCCATCGGGGCAGGC
GGTAGCCGCGACAAGCGGCCCGCCGTGATCGCCGCACAGGTTGCGGCAGAAGTGATCACGGCACTGACCTCTGAAACTGC
CGCAGACCACCCCCAGACCGGGGGGACTGCCCTGCATATCGCAGCGCAGTAG

Upstream 100 bases:

>100_bases
TCGGTTGCCGACTATCGTGAGTGCCCGCGTCTTGAGGCCCCCGCCACGCCCGAACGCGTGCTGATGGCGGTGGAACGTCT
TAAGGCCGGAGGCTGAGGCC

Downstream 100 bases:

>100_bases
TAGACCGCCGCGCCACTCGGGGAGGGAGGAGAACCGCCCCCAAGGCCGGCCATCAAAGGGAGGTCCCCATGAGGGATGGG
AGTTATACCTACAAGCTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Molybdenum Cofactor Sulfurylase; Xanthine Dehydrogenase Accessory Factor; Xanthine And Co Dehydrogenase Maturation Factor; Xanthine Dehydrogenase Accessory Factor XdhC; Xanthine Dehydrogenase Protein; Xanthine Dehydrogenase Accessory Protein; Dehydrogenase Accessory Protein; Adenosine Deaminase; Xanthine Dehydrogenase Cofactor Insertion; Xanthine Dehydrogenase Accessory Protein Xdhc; XdhC Protein; Xanthine And CO Dehydrogenases Maturation Factor; Xanthine Dehydrogenase; MPT Insertase; Dehydrogenase; Xanthine Dehydrogenase Accessory Factor X; Xanthine Dehydrogenase Xdh C Protein; XANTHINE DEHYDROGENASE Accessory Component; Xanthine Dehydrogenase XdhC; Xanthine Dehydrogenase Chaperone; Chaperone XdhC; Xanthine Dehydrogenase Maturation Factor; Xanthine/CO Dehydrogenase Maturation Protein; Xanthine Dehydrogenase Protein C Subunit

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MQAEQLRAFLDAPGPVASLRLTRVRGSSPRNTGTEMYVRADALFGTIGGGQLEHLAIAEARKLLAAGNLSDHLDVPLGPE
IGQCCGGRVEIAITRMSASDKDAALRATEAQDNALPAVYILGAGHVGRALADLLQHLPVRTVLIDQRQEELDQSSAQVER
RQSAIPEIDVMNAPEGSAFIVLTHDHGLDFLLTSAALQRGDATYVGMIGSATKRAKFASWTQDHCDGLSVADLICPIGAG
GSRDKRPAVIAAQVAAEVITALTSETAADHPQTGGTALHIAAQ

Sequences:

>Translated_283_residues
MQAEQLRAFLDAPGPVASLRLTRVRGSSPRNTGTEMYVRADALFGTIGGGQLEHLAIAEARKLLAAGNLSDHLDVPLGPE
IGQCCGGRVEIAITRMSASDKDAALRATEAQDNALPAVYILGAGHVGRALADLLQHLPVRTVLIDQRQEELDQSSAQVER
RQSAIPEIDVMNAPEGSAFIVLTHDHGLDFLLTSAALQRGDATYVGMIGSATKRAKFASWTQDHCDGLSVADLICPIGAG
GSRDKRPAVIAAQVAAEVITALTSETAADHPQTGGTALHIAAQ
>Mature_283_residues
MQAEQLRAFLDAPGPVASLRLTRVRGSSPRNTGTEMYVRADALFGTIGGGQLEHLAIAEARKLLAAGNLSDHLDVPLGPE
IGQCCGGRVEIAITRMSASDKDAALRATEAQDNALPAVYILGAGHVGRALADLLQHLPVRTVLIDQRQEELDQSSAQVER
RQSAIPEIDVMNAPEGSAFIVLTHDHGLDFLLTSAALQRGDATYVGMIGSATKRAKFASWTQDHCDGLSVADLICPIGAG
GSRDKRPAVIAAQVAAEVITALTSETAADHPQTGGTALHIAAQ

Specific function: Unknown

COG id: COG1975

COG function: function code O; Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29692; Mature: 29692

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAEQLRAFLDAPGPVASLRLTRVRGSSPRNTGTEMYVRADALFGTIGGGQLEHLAIAEA
CCHHHHHHHHCCCCCHHHEEEEEECCCCCCCCCCEEEEEEEHEEEECCCCCCHHHHHHHH
RKLLAAGNLSDHLDVPLGPEIGQCCGGRVEIAITRMSASDKDAALRATEAQDNALPAVYI
HHHHHCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEECCCCCCHHEEECCCCCCCCCEEEE
LGAGHVGRALADLLQHLPVRTVLIDQRQEELDQSSAQVERRQSAIPEIDVMNAPEGSAFI
EECCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEE
VLTHDHGLDFLLTSAALQRGDATYVGMIGSATKRAKFASWTQDHCDGLSVADLICPIGAG
EEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCHHHCCCCCHHHHHCCCCCC
GSRDKRPAVIAAQVAAEVITALTSETAADHPQTGGTALHIAAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MQAEQLRAFLDAPGPVASLRLTRVRGSSPRNTGTEMYVRADALFGTIGGGQLEHLAIAEA
CCHHHHHHHHCCCCCHHHEEEEEECCCCCCCCCCEEEEEEEHEEEECCCCCCHHHHHHHH
RKLLAAGNLSDHLDVPLGPEIGQCCGGRVEIAITRMSASDKDAALRATEAQDNALPAVYI
HHHHHCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEECCCCCCHHEEECCCCCCCCCEEEE
LGAGHVGRALADLLQHLPVRTVLIDQRQEELDQSSAQVERRQSAIPEIDVMNAPEGSAFI
EECCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEE
VLTHDHGLDFLLTSAALQRGDATYVGMIGSATKRAKFASWTQDHCDGLSVADLICPIGAG
EEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCHHHCCCCCHHHHHCCCCCC
GSRDKRPAVIAAQVAAEVITALTSETAADHPQTGGTALHIAAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA