| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is mop [H]
Identifier: 99082545
GI number: 99082545
Start: 2847805
End: 2850138
Strand: Direct
Name: mop [H]
Synonym: TM1040_2705
Alternate gene names: 99082545
Gene position: 2847805-2850138 (Clockwise)
Preceding gene: 99082544
Following gene: 99082546
Centisome position: 88.97
GC content: 62.47
Gene sequence:
>2334_bases ATGAAAGATCTGGGCAATACCACAGAGATCAAAGGTGCCGCGCATCAGGATCTCAAACACGAGAGCGCCATCAAACAGGT GCAGGGCCGCGCCGACTACACCGACGACATCCTGGAACCCGCAGGCACGCTGCATGCCTATCTCGGCGTGTCTACCGTCG CCCATGCCAACATCCGCGGCATGGATCTGAGCCGTGTGCGCGCCGCGCCCGGTGTCGTCGATGTGCTGACAGCGGATGAT ATTCCCGGCGTTAATGACGTGAGCCCCACGGGCAAACATGACGAGCCGGTGTTTCCAACCGAGAAGGTGGAGTTTCATGG CCAGCCGCTCTTTGCGGTGATTGCCGAGAGCCGCGATGCCGCACGCCGCGCCGCGGAGCTTGCGGATGTAGACTATGAGG TGCTGCCCCACGCGCTCGATGCGATTTCGGCGCGGGATGCGGGGTTGCCCATGGTCACCGACCCGCTGAAGCTCGAGCGC GGTGATGTGGAAAGCGGCCTTGCGGAGGCACCGCACCGGTTGCAGGGACGCGTTGTCGTCGGCGGTCAGGATCACATGTA TCTCGAAGGCCATATCGCCTTTGCGATTCCGGGCGAAGATGACGATGTGGTGGTGCATTGCTCCACCCAGCATCCGAGCG AGGCGCAGCACATGGTGTCCCATGTGCTCGGCGTGCCGTCGAATGCGGTGGTGGTGAACGTGCGCCGCATGGGCGGGGGG TTTGGCGGCAAGGAAAGCCAGATGAATCTGTTCTGCGCCTTTGCCGCCCTTGGCGCCAAGAAGCTGAACCGTCCGGTGAA AATCCGCCCCGACCGCGATCAGGACATGACTGCCACCGGCAAGCGGCATGACTTTGTGATCGACTATGATCTGGGCTTTG ACAATGAGGGGCGGATCGAAGCCGTCGAGAGCCAGTTTGCCGCGCGCTGCGGCTATTCCTCGGACCTCTCCGGCCCCGTG ACCGACCGCGCGCTGTTTCATGCCGACAACGCCTATTTCTACCCCAATGTCCGTCTGACCTCCTGTCCGCAGAAGACGAA TACAGTCTCTAACACGGCATTTAGAGGCTTTGGCGGCCCGCAGGGCGTGGTCGCCGCGGAACGAATGATCGAGGAAATCG CCTATGCGCTGGGCAAGGACCCGCTGGAGGTGCGCAAGGCGAATTTCTACGGCCAACCCGGTGATGGCCGCACCCTCACG CCCTATCATCAGGAGGTGGAGGACAATGTGATCGGTCGCATTGTCGAGGAACTGGAAGAGAGCAGCGACTATCAGGCCCG CCGCGCGGCGATCATTGCCGAGAACACAAAGGGCGGCATCATCCGTCGTGGCATCGCGCTGACACCGGTCAAATTCGGCA TCTCCTTTACTGCCACGTGGTACAATCAGGCCGGCGCTCTGATCCACATCTACAACGATGGCTCGATCCACCTCAATCAT GGCGGCACCGAGATGGGGCAGGGCCTCAACACCAAGGTCGCGCAGGTGGTGGCCGAGGCGTTTCAGGTCGATTTCGACCG CATCAAGATCACCAAGACCACGACCGAAAAAGTCCCGAACACCTCTGCCACGGCGGCCTCTTCGGGGTCCGACCTCAACG GGATGGCGGCGCTGGATGCCTGCGAGCAGATCAAGGCGCGGCTGGTGAAATTTGCCGCCGAGAGCCGGGGCGTGGCCGAA AGCGCCGTGCGCTTTGGACCCAACCAGATCCGCATCGGCGAGGAGGTGGTGGACTTTGCCGCCTTTATCCGCGAGGCCTA TATGGCGCGGGTGCATCTGTCGGCGGCAGGGTTCTACAAGACGCCCAAGATCCATTGGGACCGTGCGGCGGGCAAGGGAC GGCCGTTCTACTATTACGCCTATGGCGCGTCCTGCTCGGAGGTTTCCATCGATACGCTCACCGGCGAGTACCGGGTGGAG CGCACCGACATCCTGCATGACGTGGGCCGATCCCTTAATCCGATCCTCGACAAGGGGCAGGTCGAAGGCGCGTTTATTCA GGGCATGGGCTGGCTCACCACAGAGGAGCTCTGGTGGGACAAAGACGGGCGCCTGCGCACCCATGCGCCTTCGACCTACA AGATCCCGCTGGCCTCTGACCGCCCGCGCAGCTTCAACGTGAAGCTCGCCGACTGGTCTGAAAACCGCGAGATGACCATC AAACGCTCTAAGGCGGTGGGCGAGCCGCCCTTCATGCTGGGGATTTCTGTTCTGGAGGCGCTGTCGATGGCGGTGGCCTC GGTTGCCGACTATCGTGAGTGCCCGCGTCTTGAGGCCCCCGCCACGCCCGAACGCGTGCTGATGGCGGTGGAACGTCTTA AGGCCGGAGGCTGA
Upstream 100 bases:
>100_bases TGACCGTCGCCGCGAACCTGTTGCGCCGGTTCTACCTCGAACAAGACAGCACCCAGGGCGCACCCGTGCGTCTGGCCATC GCGTGAGGGAGGAGACACCT
Downstream 100 bases:
>100_bases GGCCATGCAGGCAGAGCAGCTTCGTGCATTTCTTGACGCCCCGGGCCCGGTTGCGAGCCTGCGGCTCACGAGGGTTCGCG GGTCCTCTCCGCGCAACACG
Product: xanthine oxidase / xanthine dehydrogenase, molybdenum binding subunit apoprotein
Products: NA
Alternate protein names: Molybdenum iron sulfur protein [H]
Number of amino acids: Translated: 777; Mature: 777
Protein sequence:
>777_residues MKDLGNTTEIKGAAHQDLKHESAIKQVQGRADYTDDILEPAGTLHAYLGVSTVAHANIRGMDLSRVRAAPGVVDVLTADD IPGVNDVSPTGKHDEPVFPTEKVEFHGQPLFAVIAESRDAARRAAELADVDYEVLPHALDAISARDAGLPMVTDPLKLER GDVESGLAEAPHRLQGRVVVGGQDHMYLEGHIAFAIPGEDDDVVVHCSTQHPSEAQHMVSHVLGVPSNAVVVNVRRMGGG FGGKESQMNLFCAFAALGAKKLNRPVKIRPDRDQDMTATGKRHDFVIDYDLGFDNEGRIEAVESQFAARCGYSSDLSGPV TDRALFHADNAYFYPNVRLTSCPQKTNTVSNTAFRGFGGPQGVVAAERMIEEIAYALGKDPLEVRKANFYGQPGDGRTLT PYHQEVEDNVIGRIVEELEESSDYQARRAAIIAENTKGGIIRRGIALTPVKFGISFTATWYNQAGALIHIYNDGSIHLNH GGTEMGQGLNTKVAQVVAEAFQVDFDRIKITKTTTEKVPNTSATAASSGSDLNGMAALDACEQIKARLVKFAAESRGVAE SAVRFGPNQIRIGEEVVDFAAFIREAYMARVHLSAAGFYKTPKIHWDRAAGKGRPFYYYAYGASCSEVSIDTLTGEYRVE RTDILHDVGRSLNPILDKGQVEGAFIQGMGWLTTEELWWDKDGRLRTHAPSTYKIPLASDRPRSFNVKLADWSENREMTI KRSKAVGEPPFMLGISVLEALSMAVASVADYRECPRLEAPATPERVLMAVERLKAGG
Sequences:
>Translated_777_residues MKDLGNTTEIKGAAHQDLKHESAIKQVQGRADYTDDILEPAGTLHAYLGVSTVAHANIRGMDLSRVRAAPGVVDVLTADD IPGVNDVSPTGKHDEPVFPTEKVEFHGQPLFAVIAESRDAARRAAELADVDYEVLPHALDAISARDAGLPMVTDPLKLER GDVESGLAEAPHRLQGRVVVGGQDHMYLEGHIAFAIPGEDDDVVVHCSTQHPSEAQHMVSHVLGVPSNAVVVNVRRMGGG FGGKESQMNLFCAFAALGAKKLNRPVKIRPDRDQDMTATGKRHDFVIDYDLGFDNEGRIEAVESQFAARCGYSSDLSGPV TDRALFHADNAYFYPNVRLTSCPQKTNTVSNTAFRGFGGPQGVVAAERMIEEIAYALGKDPLEVRKANFYGQPGDGRTLT PYHQEVEDNVIGRIVEELEESSDYQARRAAIIAENTKGGIIRRGIALTPVKFGISFTATWYNQAGALIHIYNDGSIHLNH GGTEMGQGLNTKVAQVVAEAFQVDFDRIKITKTTTEKVPNTSATAASSGSDLNGMAALDACEQIKARLVKFAAESRGVAE SAVRFGPNQIRIGEEVVDFAAFIREAYMARVHLSAAGFYKTPKIHWDRAAGKGRPFYYYAYGASCSEVSIDTLTGEYRVE RTDILHDVGRSLNPILDKGQVEGAFIQGMGWLTTEELWWDKDGRLRTHAPSTYKIPLASDRPRSFNVKLADWSENREMTI KRSKAVGEPPFMLGISVLEALSMAVASVADYRECPRLEAPATPERVLMAVERLKAGG >Mature_777_residues MKDLGNTTEIKGAAHQDLKHESAIKQVQGRADYTDDILEPAGTLHAYLGVSTVAHANIRGMDLSRVRAAPGVVDVLTADD IPGVNDVSPTGKHDEPVFPTEKVEFHGQPLFAVIAESRDAARRAAELADVDYEVLPHALDAISARDAGLPMVTDPLKLER GDVESGLAEAPHRLQGRVVVGGQDHMYLEGHIAFAIPGEDDDVVVHCSTQHPSEAQHMVSHVLGVPSNAVVVNVRRMGGG FGGKESQMNLFCAFAALGAKKLNRPVKIRPDRDQDMTATGKRHDFVIDYDLGFDNEGRIEAVESQFAARCGYSSDLSGPV TDRALFHADNAYFYPNVRLTSCPQKTNTVSNTAFRGFGGPQGVVAAERMIEEIAYALGKDPLEVRKANFYGQPGDGRTLT PYHQEVEDNVIGRIVEELEESSDYQARRAAIIAENTKGGIIRRGIALTPVKFGISFTATWYNQAGALIHIYNDGSIHLNH GGTEMGQGLNTKVAQVVAEAFQVDFDRIKITKTTTEKVPNTSATAASSGSDLNGMAALDACEQIKARLVKFAAESRGVAE SAVRFGPNQIRIGEEVVDFAAFIREAYMARVHLSAAGFYKTPKIHWDRAAGKGRPFYYYAYGASCSEVSIDTLTGEYRVE RTDILHDVGRSLNPILDKGQVEGAFIQGMGWLTTEELWWDKDGRLRTHAPSTYKIPLASDRPRSFNVKLADWSENREMTI KRSKAVGEPPFMLGISVLEALSMAVASVADYRECPRLEAPATPERVLMAVERLKAGG
Specific function: Presumed To Be A Dehydrogenase, But Possibly An Oxidase. Participates In Limited Purine Salvage (Requires Aspartate) But Does Not Support Aerobic Growth On Purines As The Sole Carbon Source (Purine Catabolism). Deletion Results In Increased Adenine Sensit
COG id: COG4631
COG function: function code F; Xanthine dehydrogenase, molybdopterin-binding subunit B
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]
Homologues:
Organism=Homo sapiens, GI91823271, Length=771, Percent_Identity=42.2827496757458, Blast_Score=579, Evalue=1e-165, Organism=Homo sapiens, GI71773480, Length=760, Percent_Identity=36.5789473684211, Blast_Score=460, Evalue=1e-129, Organism=Escherichia coli, GI1789230, Length=773, Percent_Identity=26.908150064683, Blast_Score=211, Evalue=1e-55, Organism=Escherichia coli, GI1789246, Length=823, Percent_Identity=26.7314702308627, Blast_Score=196, Evalue=4e-51, Organism=Escherichia coli, GI1786478, Length=697, Percent_Identity=23.6728837876614, Blast_Score=114, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17540638, Length=768, Percent_Identity=40.1041666666667, Blast_Score=509, Evalue=1e-144, Organism=Caenorhabditis elegans, GI32566215, Length=721, Percent_Identity=33.5644937586685, Blast_Score=366, Evalue=1e-101, Organism=Caenorhabditis elegans, GI17539860, Length=738, Percent_Identity=32.9268292682927, Blast_Score=345, Evalue=6e-95, Organism=Drosophila melanogaster, GI17737937, Length=759, Percent_Identity=41.7654808959157, Blast_Score=545, Evalue=1e-155, Organism=Drosophila melanogaster, GI24647193, Length=774, Percent_Identity=33.4625322997416, Blast_Score=340, Evalue=2e-93, Organism=Drosophila melanogaster, GI24647199, Length=762, Percent_Identity=31.2335958005249, Blast_Score=320, Evalue=2e-87, Organism=Drosophila melanogaster, GI24647201, Length=776, Percent_Identity=31.0567010309278, Blast_Score=306, Evalue=4e-83, Organism=Drosophila melanogaster, GI24647195, Length=780, Percent_Identity=29.3589743589744, Blast_Score=286, Evalue=5e-77, Organism=Drosophila melanogaster, GI24647197, Length=770, Percent_Identity=29.6103896103896, Blast_Score=285, Evalue=1e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002888 - InterPro: IPR006058 - InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012675 - InterPro: IPR001041 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2; PF00111 Fer2; PF01799 Fer2_2 [H]
EC number: =1.2.99.7 [H]
Molecular weight: Translated: 84645; Mature: 84645
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDLGNTTEIKGAAHQDLKHESAIKQVQGRADYTDDILEPAGTLHAYLGVSTVAHANIRG CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCC MDLSRVRAAPGVVDVLTADDIPGVNDVSPTGKHDEPVFPTEKVEFHGQPLFAVIAESRDA CCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCHHH ARRAAELADVDYEVLPHALDAISARDAGLPMVTDPLKLERGDVESGLAEAPHRLQGRVVV HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHCCHHHCCEEEE GGQDHMYLEGHIAFAIPGEDDDVVVHCSTQHPSEAQHMVSHVLGVPSNAVVVNVRRMGGG CCCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCC FGGKESQMNLFCAFAALGAKKLNRPVKIRPDRDQDMTATGKRHDFVIDYDLGFDNEGRIE CCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHH AVESQFAARCGYSSDLSGPVTDRALFHADNAYFYPNVRLTSCPQKTNTVSNTAFRGFGGP HHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEECCCCEEECCCCCCCCCCCCCCCCCCCC QGVVAAERMIEEIAYALGKDPLEVRKANFYGQPGDGRTLTPYHQEVEDNVIGRIVEELEE CHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH SSDYQARRAAIIAENTKGGIIRRGIALTPVKFGISFTATWYNQAGALIHIYNDGSIHLNH CCCHHHHEEEEEEECCCCCEEECCEEECEEEECEEEEEEEECCCCCEEEEEECCEEEEEC GGTEMGQGLNTKVAQVVAEAFQVDFDRIKITKTTTEKVPNTSATAASSGSDLNGMAALDA CCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCHHHHHH CEQIKARLVKFAAESRGVAESAVRFGPNQIRIGEEVVDFAAFIREAYMARVHLSAAGFYK HHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHEEEEECCCCC TPKIHWDRAAGKGRPFYYYAYGASCSEVSIDTLTGEYRVERTDILHDVGRSLNPILDKGQ CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCEEEHHHHHHHHHHHHHCHHHCCCC VEGAFIQGMGWLTTEELWWDKDGRLRTHAPSTYKIPLASDRPRSFNVKLADWSENREMTI CCCEEEECCCCCEEHHHEECCCCCEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCEEE KRSKAVGEPPFMLGISVLEALSMAVASVADYRECPRLEAPATPERVLMAVERLKAGG EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKDLGNTTEIKGAAHQDLKHESAIKQVQGRADYTDDILEPAGTLHAYLGVSTVAHANIRG CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCC MDLSRVRAAPGVVDVLTADDIPGVNDVSPTGKHDEPVFPTEKVEFHGQPLFAVIAESRDA CCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCHHH ARRAAELADVDYEVLPHALDAISARDAGLPMVTDPLKLERGDVESGLAEAPHRLQGRVVV HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHCCHHHCCEEEE GGQDHMYLEGHIAFAIPGEDDDVVVHCSTQHPSEAQHMVSHVLGVPSNAVVVNVRRMGGG CCCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCC FGGKESQMNLFCAFAALGAKKLNRPVKIRPDRDQDMTATGKRHDFVIDYDLGFDNEGRIE CCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHH AVESQFAARCGYSSDLSGPVTDRALFHADNAYFYPNVRLTSCPQKTNTVSNTAFRGFGGP HHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEECCCCEEECCCCCCCCCCCCCCCCCCCC QGVVAAERMIEEIAYALGKDPLEVRKANFYGQPGDGRTLTPYHQEVEDNVIGRIVEELEE CHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH SSDYQARRAAIIAENTKGGIIRRGIALTPVKFGISFTATWYNQAGALIHIYNDGSIHLNH CCCHHHHEEEEEEECCCCCEEECCEEECEEEECEEEEEEEECCCCCEEEEEECCEEEEEC GGTEMGQGLNTKVAQVVAEAFQVDFDRIKITKTTTEKVPNTSATAASSGSDLNGMAALDA CCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCHHHHHH CEQIKARLVKFAAESRGVAESAVRFGPNQIRIGEEVVDFAAFIREAYMARVHLSAAGFYK HHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHEEEEECCCCC TPKIHWDRAAGKGRPFYYYAYGASCSEVSIDTLTGEYRVERTDILHDVGRSLNPILDKGQ CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCEEEHHHHHHHHHHHHHCHHHCCCC VEGAFIQGMGWLTTEELWWDKDGRLRTHAPSTYKIPLASDRPRSFNVKLADWSENREMTI CCCEEEECCCCCEEHHHEECCCCCEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCEEE KRSKAVGEPPFMLGISVLEALSMAVASVADYRECPRLEAPATPERVLMAVERLKAGG EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8143744; 7502041; 8799115; 11713686 [H]