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The map label for this gene is glxA [H]

Identifier: 99082535

GI number: 99082535

Start: 2836696

End: 2837706

Strand: Reverse

Name: glxA [H]

Synonym: TM1040_2695

Alternate gene names: 99082535

Gene position: 2837706-2836696 (Counterclockwise)

Preceding gene: 99082537

Following gene: 99082534

Centisome position: 88.65

GC content: 62.02

Gene sequence:

>1011_bases
ATGGACAGAAACCCCGCCTCTCCCGCTGCATCCGATCACAGCGATGACACCCCGCGACTGGCGGTGGAAATATTTGTGCA
GCCGGGATTTTCCCAGCTCGAGCTTTCGTTGATTCTCGCTGTGTTTGAGGCGGCAAACGCAATGGAGACCGGCATCTGGT
TCTCCGTTCGCATCACCTCTGACAGCCCGGGCGTGGTGACAGGCGGCGCGGGCATGATGGTGCGGGCAGAACCTGCGATT
GGTCTTCAGTATCTTCAGGATCTGATGTTTGTGGTGGGGGGGCGCAATTGCAGCGGCGGCAGCTGGCTCGCACGGGCGCG
CGCAATGCAGAAACTGCGTCGCCCGGTGTTCCTGCTGTCGGATGCAGCAACCGCCTATATCCGCAGATGTGCGCCGCTCT
CGGGGCCCGCCACCACCCATTGGCAAGACCTGCGCGCCCTGCGTGAGACCGGCGAATACCCCACGCTCACCGATAGCCTC
GTGGCGGAAAATGCAGGCATTCTGACCTCGGCCGGGGGGGGATATACGGCGGAAATGGTGGTGCGTCACCTCTCGCAGAT
CCTTGCACCGCAACACTGCGCCGAATTGGCCAGCGTGTTGATGATCGAAACCGCTCGGGGTTACAGCGGAGAACAACCCA
AAGGGGCCGCGCGCAACACCAATCTTCTGGAGGCGCGGCTGGTGCGCGCTATGGCGATCATGGAAGAATGCATCGAATAT
CCCCTGTCCACCGCAGAGGTGGCCGAGCGGGCGGGGATTTCGGTGCGGCATCTGGAACGCCTGTTTCTGACCCATCTCAA
CACCACACCGGCCAAACACTACATGCAGCTGCGCCTGAAGCTGGCCAACAAGCTCATCACCGACACCAACCTGCCGATTG
CAGAGATCGCCTTTGCCAGCGGCTTTGCGTCCTCTACGTCGCTGTCGCGCGCGTATCGGCGTGAATATAATATGACCCCC
TATCAGGTGCGCGCCCGTGATCGGGCCGGTGCGGGTCTGCGCGCGGACTAG

Upstream 100 bases:

>100_bases
GCGCTATGCTGGCAGGCGCATTGGCGTCGCAAAGCGACACCAAAGCGGCACGAGATGACTTGTCGATGGGAACCCGACGC
GGGTAGGGTCTCGATCCAAT

Downstream 100 bases:

>100_bases
CCTCTGGGATGTCACCCGTGCTTTGGAACACAAGGCTTTGAATTTGCGCCCGGTCTTCGTATGGGTAGCACAACGCGGCC
GGCGCTCGTGACGCCGTGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MDRNPASPAASDHSDDTPRLAVEIFVQPGFSQLELSLILAVFEAANAMETGIWFSVRITSDSPGVVTGGAGMMVRAEPAI
GLQYLQDLMFVVGGRNCSGGSWLARARAMQKLRRPVFLLSDAATAYIRRCAPLSGPATTHWQDLRALRETGEYPTLTDSL
VAENAGILTSAGGGYTAEMVVRHLSQILAPQHCAELASVLMIETARGYSGEQPKGAARNTNLLEARLVRAMAIMEECIEY
PLSTAEVAERAGISVRHLERLFLTHLNTTPAKHYMQLRLKLANKLITDTNLPIAEIAFASGFASSTSLSRAYRREYNMTP
YQVRARDRAGAGLRAD

Sequences:

>Translated_336_residues
MDRNPASPAASDHSDDTPRLAVEIFVQPGFSQLELSLILAVFEAANAMETGIWFSVRITSDSPGVVTGGAGMMVRAEPAI
GLQYLQDLMFVVGGRNCSGGSWLARARAMQKLRRPVFLLSDAATAYIRRCAPLSGPATTHWQDLRALRETGEYPTLTDSL
VAENAGILTSAGGGYTAEMVVRHLSQILAPQHCAELASVLMIETARGYSGEQPKGAARNTNLLEARLVRAMAIMEECIEY
PLSTAEVAERAGISVRHLERLFLTHLNTTPAKHYMQLRLKLANKLITDTNLPIAEIAFASGFASSTSLSRAYRREYNMTP
YQVRARDRAGAGLRAD
>Mature_336_residues
MDRNPASPAASDHSDDTPRLAVEIFVQPGFSQLELSLILAVFEAANAMETGIWFSVRITSDSPGVVTGGAGMMVRAEPAI
GLQYLQDLMFVVGGRNCSGGSWLARARAMQKLRRPVFLLSDAATAYIRRCAPLSGPATTHWQDLRALRETGEYPTLTDSL
VAENAGILTSAGGGYTAEMVVRHLSQILAPQHCAELASVLMIETARGYSGEQPKGAARNTNLLEARLVRAMAIMEECIEY
PLSTAEVAERAGISVRHLERLFLTHLNTTPAKHYMQLRLKLANKLITDTNLPIAEIAFASGFASSTSLSRAYRREYNMTP
YQVRARDRAGAGLRAD

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36540; Mature: 36540

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRNPASPAASDHSDDTPRLAVEIFVQPGFSQLELSLILAVFEAANAMETGIWFSVRITS
CCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEC
DSPGVVTGGAGMMVRAEPAIGLQYLQDLMFVVGGRNCSGGSWLARARAMQKLRRPVFLLS
CCCCEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEH
DAATAYIRRCAPLSGPATTHWQDLRALRETGEYPTLTDSLVAENAGILTSAGGGYTAEMV
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCHHHHHH
VRHLSQILAPQHCAELASVLMIETARGYSGEQPKGAARNTNLLEARLVRAMAIMEECIEY
HHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
PLSTAEVAERAGISVRHLERLFLTHLNTTPAKHYMQLRLKLANKLITDTNLPIAEIAFAS
CCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GFASSTSLSRAYRREYNMTPYQVRARDRAGAGLRAD
CCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MDRNPASPAASDHSDDTPRLAVEIFVQPGFSQLELSLILAVFEAANAMETGIWFSVRITS
CCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEC
DSPGVVTGGAGMMVRAEPAIGLQYLQDLMFVVGGRNCSGGSWLARARAMQKLRRPVFLLS
CCCCEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEH
DAATAYIRRCAPLSGPATTHWQDLRALRETGEYPTLTDSLVAENAGILTSAGGGYTAEMV
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCHHHHHH
VRHLSQILAPQHCAELASVLMIETARGYSGEQPKGAARNTNLLEARLVRAMAIMEECIEY
HHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
PLSTAEVAERAGISVRHLERLFLTHLNTTPAKHYMQLRLKLANKLITDTNLPIAEIAFAS
CCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
GFASSTSLSRAYRREYNMTPYQVRARDRAGAGLRAD
CCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]