Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082527

Identifier: 99082527

GI number: 99082527

Start: 2826841

End: 2827515

Strand: Direct

Name: 99082527

Synonym: TM1040_2687

Alternate gene names: NA

Gene position: 2826841-2827515 (Clockwise)

Preceding gene: 99082521

Following gene: 99082529

Centisome position: 88.31

GC content: 65.48

Gene sequence:

>675_bases
ATGACCTTTTCAATCCTGATGTATGACCGAGAAACAGGCTGTTATGCGGCCGCAGCGGCGACCGGCAGCCTCTGTGTCGG
GGGCTGGGTTTTGCGGGGAGACATCGAATCAGGGCTGGTGGCATCGCAAGGAACCGCCCCCAGCACATTCTGGCGCGATG
ACGTGCTGCGGCGAATGTATGACGGCGCGCTCGCCCATGCGGCTGTGGATCAGGTGACCGGGGGGGATGCCGGACGGGGG
CATCGGCAGCTTCTTGCGCTGGACCGCAAGGGCGGGACGGCTGGCTTCACCGGGGCGCAGAGCGTAGGTTATGCGGATCA
TATAGCCGAGCAGGATCTGGCAATTGCAGGCAATATGCTCGCTGGGCGACAGGTTTTGACCGCGATGAGAGAGACCGCAC
GAGGCGAATTCGCCACGCCCTCGGACCGGATGCTGGCAGTGTTGGATGCGGCGGCGGCAGCAGGTGGGGACGCGCGGGGG
CTGCTATCGGCGGCGCTCCTCGTGCTTTCGCCCGACCGTCCGCCGCTCGATCTGCGCATCGACCATAGCGACGATCCGCT
GCCTGCCCTGCGCGCCCTCTGTCTGCGCGCGCATCGCGCGCCGTATTACGATTGGCTGACAGAAGTCCCCGTGCTGAAAG
ACCGGCACCGGGCCGTTCTACCCGACGCCAGTTGA

Upstream 100 bases:

>100_bases
CCTCTCTGTTGAGATTTATTTTTCATGATTAATTGTATCCACGCAAATTTTCATGATAAATACAAGTCCAAACCTGCAAG
ACCCCCGCCCGGAGACCGCG

Downstream 100 bases:

>100_bases
CGCCCCCTAACGCTGTTCGCCAATGAATCGGCGCGCCAGTTGCGCCTCTTGTGAGCGCATCTGCTCCTCTGCGCCCTGCA
TATGCGAGGCCATGATCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTFSILMYDRETGCYAAAAATGSLCVGGWVLRGDIESGLVASQGTAPSTFWRDDVLRRMYDGALAHAAVDQVTGGDAGRG
HRQLLALDRKGGTAGFTGAQSVGYADHIAEQDLAIAGNMLAGRQVLTAMRETARGEFATPSDRMLAVLDAAAAAGGDARG
LLSAALLVLSPDRPPLDLRIDHSDDPLPALRALCLRAHRAPYYDWLTEVPVLKDRHRAVLPDAS

Sequences:

>Translated_224_residues
MTFSILMYDRETGCYAAAAATGSLCVGGWVLRGDIESGLVASQGTAPSTFWRDDVLRRMYDGALAHAAVDQVTGGDAGRG
HRQLLALDRKGGTAGFTGAQSVGYADHIAEQDLAIAGNMLAGRQVLTAMRETARGEFATPSDRMLAVLDAAAAAGGDARG
LLSAALLVLSPDRPPLDLRIDHSDDPLPALRALCLRAHRAPYYDWLTEVPVLKDRHRAVLPDAS
>Mature_223_residues
TFSILMYDRETGCYAAAAATGSLCVGGWVLRGDIESGLVASQGTAPSTFWRDDVLRRMYDGALAHAAVDQVTGGDAGRGH
RQLLALDRKGGTAGFTGAQSVGYADHIAEQDLAIAGNMLAGRQVLTAMRETARGEFATPSDRMLAVLDAAAAAGGDARGL
LSAALLVLSPDRPPLDLRIDHSDDPLPALRALCLRAHRAPYYDWLTEVPVLKDRHRAVLPDAS

Specific function: Unknown

COG id: COG3342

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23697; Mature: 23566

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFSILMYDRETGCYAAAAATGSLCVGGWVLRGDIESGLVASQGTAPSTFWRDDVLRRMY
CEEEEEEEECCCCCEEEHHCCCCEEECCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHH
DGALAHAAVDQVTGGDAGRGHRQLLALDRKGGTAGFTGAQSVGYADHIAEQDLAIAGNML
HHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHH
AGRQVLTAMRETARGEFATPSDRMLAVLDAAAAAGGDARGLLSAALLVLSPDRPPLDLRI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCEEEEE
DHSDDPLPALRALCLRAHRAPYYDWLTEVPVLKDRHRAVLPDAS
CCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TFSILMYDRETGCYAAAAATGSLCVGGWVLRGDIESGLVASQGTAPSTFWRDDVLRRMY
EEEEEEEECCCCCEEEHHCCCCEEECCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHH
DGALAHAAVDQVTGGDAGRGHRQLLALDRKGGTAGFTGAQSVGYADHIAEQDLAIAGNML
HHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHH
AGRQVLTAMRETARGEFATPSDRMLAVLDAAAAAGGDARGLLSAALLVLSPDRPPLDLRI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCEEEEE
DHSDDPLPALRALCLRAHRAPYYDWLTEVPVLKDRHRAVLPDAS
CCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA