Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082520

Identifier: 99082520

GI number: 99082520

Start: 2818500

End: 2819261

Strand: Direct

Name: 99082520

Synonym: TM1040_2680

Alternate gene names: NA

Gene position: 2818500-2819261 (Clockwise)

Preceding gene: 99082519

Following gene: 99082521

Centisome position: 88.05

GC content: 62.34

Gene sequence:

>762_bases
ATGGGAAAACTACTGGAACGAGTGCTGAACACGGGCGCCTTGCGGCGCTGGCGCAGAGCTGCACGGGCGGCCCCCTCGAC
GCCACTGGCACGCTTGCGCCAACAGCGCAATGATGCTCGCAAGCTGCGGATGCATCTCGATCAGCTGATCCATACCGCCG
ACAACCGTCTGGCGCTGCCAAAGATCGACTCGTCATATTTCCCGCGCCCGCATGGTACCGACTGGTCCTGGCGGCCCGAG
CTCTGGCGCGGCCCATTGCCGGTGGCCGGTGTGTCCTCGGTGCCGAGCAAGACCCGGCTTGGCCATGAGATCCAGATGTT
TCACGACTGCGCCATCTCCGAGCTGACCCTGCGCCAACTGCGCAACACGCGCGAGGAGGATCTGGCGCCCTACGGGTTGC
GGATGGATGTGTTCAAGTTCGACGGCTCGTTCCTGTCGCTGGTGATCGACCTGCCTGCCGAAGCCACGCAGGGGCTCACC
CGGCAGCATCTGGTGCGGCTGGACTGCATTGCCGAGAGCGAAAAGCCGATCGAAATCTTCGCCCGTCTCAATATCAAACA
CGGCCCCAACACCGAGCAGTTGGTGCGGGAGCTGCCGCCGGGCGAGAAAACCTTCTCGGTGGAATATGACCTGGCCTATT
CGCGGCTCAACGAAAAGCGCATCGAGAAGGCCTGGATCGATCTGATCTTTGAAGCGCCAGACATGAACCAGGTGGTGCTG
CGGGATCTGACCTTTGCGCGTTTTCTGCGCGCCAACCTCTGA

Upstream 100 bases:

>100_bases
AGAAACACCTTTGTCCCCGCTCGCTAATTCGTTAATATGAGAGGCAAATCCCGGCAGAACAGGCCGGGACACGCGCGCGA
ATGCGCTACCTGAGGGCAGG

Downstream 100 bases:

>100_bases
CCGCGCGCTGCGCAATCGCCAATGGGAGAGCCCAGATGAGTGCCATGACGCTCCAGAAGATCCGTTTTCGCTCCGGCCTC
TGGGAAGGTCGGATTGAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MGKLLERVLNTGALRRWRRAARAAPSTPLARLRQQRNDARKLRMHLDQLIHTADNRLALPKIDSSYFPRPHGTDWSWRPE
LWRGPLPVAGVSSVPSKTRLGHEIQMFHDCAISELTLRQLRNTREEDLAPYGLRMDVFKFDGSFLSLVIDLPAEATQGLT
RQHLVRLDCIAESEKPIEIFARLNIKHGPNTEQLVRELPPGEKTFSVEYDLAYSRLNEKRIEKAWIDLIFEAPDMNQVVL
RDLTFARFLRANL

Sequences:

>Translated_253_residues
MGKLLERVLNTGALRRWRRAARAAPSTPLARLRQQRNDARKLRMHLDQLIHTADNRLALPKIDSSYFPRPHGTDWSWRPE
LWRGPLPVAGVSSVPSKTRLGHEIQMFHDCAISELTLRQLRNTREEDLAPYGLRMDVFKFDGSFLSLVIDLPAEATQGLT
RQHLVRLDCIAESEKPIEIFARLNIKHGPNTEQLVRELPPGEKTFSVEYDLAYSRLNEKRIEKAWIDLIFEAPDMNQVVL
RDLTFARFLRANL
>Mature_252_residues
GKLLERVLNTGALRRWRRAARAAPSTPLARLRQQRNDARKLRMHLDQLIHTADNRLALPKIDSSYFPRPHGTDWSWRPEL
WRGPLPVAGVSSVPSKTRLGHEIQMFHDCAISELTLRQLRNTREEDLAPYGLRMDVFKFDGSFLSLVIDLPAEATQGLTR
QHLVRLDCIAESEKPIEIFARLNIKHGPNTEQLVRELPPGEKTFSVEYDLAYSRLNEKRIEKAWIDLIFEAPDMNQVVLR
DLTFARFLRANL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29237; Mature: 29106

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLLERVLNTGALRRWRRAARAAPSTPLARLRQQRNDARKLRMHLDQLIHTADNRLALP
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
KIDSSYFPRPHGTDWSWRPELWRGPLPVAGVSSVPSKTRLGHEIQMFHDCAISELTLRQL
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
RNTREEDLAPYGLRMDVFKFDGSFLSLVIDLPAEATQGLTRQHLVRLDCIAESEKPIEIF
HCCHHHHCCCCCCEEEEEEECCCEEEHEEECCCHHHHCHHHHHHHHHHHHCCCCCCEEEE
ARLNIKHGPNTEQLVRELPPGEKTFSVEYDLAYSRLNEKRIEKAWIDLIFEAPDMNQVVL
EEEECCCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RDLTFARFLRANL
HHHHHHHHHHHCC
>Mature Secondary Structure 
GKLLERVLNTGALRRWRRAARAAPSTPLARLRQQRNDARKLRMHLDQLIHTADNRLALP
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
KIDSSYFPRPHGTDWSWRPELWRGPLPVAGVSSVPSKTRLGHEIQMFHDCAISELTLRQL
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
RNTREEDLAPYGLRMDVFKFDGSFLSLVIDLPAEATQGLTRQHLVRLDCIAESEKPIEIF
HCCHHHHCCCCCCEEEEEEECCCEEEHEEECCCHHHHCHHHHHHHHHHHHCCCCCCEEEE
ARLNIKHGPNTEQLVRELPPGEKTFSVEYDLAYSRLNEKRIEKAWIDLIFEAPDMNQVVL
EEEECCCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RDLTFARFLRANL
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA