| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99082504
Identifier: 99082504
GI number: 99082504
Start: 2799408
End: 2800334
Strand: Direct
Name: 99082504
Synonym: TM1040_2664
Alternate gene names: NA
Gene position: 2799408-2800334 (Clockwise)
Preceding gene: 99082503
Following gene: 99082505
Centisome position: 87.46
GC content: 63.97
Gene sequence:
>927_bases ATGCGCCGCCGTTCTTTCATCCGACTAGCCTCCGTCGCGATCGGCCTCTTGGTCGCTCTCTGCGCGGCTGCCCTTGCGGC CTCCACCGTCTGGAGCGTGACTCACGCCGACAGCAACAGCGCCCGGCTTGTCTCAAGCTACCGCTGGCACGAAGATGCGC CGTGGTTCGGGGGCATGTCGGGGCTGGAACTCTCAGAGGACGGGACGCGCTTTGTCGCGATCACCGACCGTTCGCATCTG GTCAAGGGCGAGATCATTCGGCAGGACGGCGACATCACCGGCCTGCGGATGACCGAACAACACCGTCTGCGCAACGCGGG CGGCGCGCGGATGCCCGAGGATGTCGAAGACAGCGAGGGCCTCGTGGTTCAGGGCGCGCAGATGTTTGTCTCTTTTGAAA GCCCCCATCGGGTGCTGGAGTACAACGCAACCGAGGTGCGCCAACTGCCCTCACCAAGAGGATTTCGGCGGTTCTCTTTC AACGCGTCCTTTGAAGCGCTGGCCCAAAGCCCCGAGGGCGATCTGGTCCTGATAGCCGAAAGCCCGCCGCGCAATAAAAA TGTCTCAAGAGTCTGGCGCTGGTCCGGGGCCGAGGGCTGGCAGGGGCTTGGGCCCTACCCCGAAGCGGATGGCTTCCTGC CCGTGGGGGCGGATTTTGGCCCCGATGGCGCGCTCTATGTGCTGGAGCGGAAGTTCGCAAAGATCGGCTTTCGCAGCCGC CTGCGTCGCTTTGACCTCACTGCAAAGGGGCTCGGTGGCGGGGAGATCCTGCTCAATACGCCGCTGGCCCGCCACGACAA CCTTGAGGGGCTGAGCATCTGGCGCACCCCATCCGGCAATCTGCGCGCCACGATGATTTCAGACGATAATTTCTTTTGGG TGCAGCGCACGGAGCTGGTGGAATACGATCTGCCCGCGCGCCCCTGA
Upstream 100 bases:
>100_bases TCGCCAATATCCTGAACCCGCCGCCCCCAAAACCGGTTGACCCGAACGCGCCAAAGCCTAAACCGCGCAGGGATTACACC CTTTCGGATCTGCCTCAGCA
Downstream 100 bases:
>100_bases GCCCTGTCCCCGTCCAGCCAGACACGCAGCGCCCCATAAAATATGGGCGTATTGGCTTGCAATCGACTCTGGATCTGCAT AAACGAGGCGATCTTTCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 308; Mature: 308
Protein sequence:
>308_residues MRRRSFIRLASVAIGLLVALCAAALAASTVWSVTHADSNSARLVSSYRWHEDAPWFGGMSGLELSEDGTRFVAITDRSHL VKGEIIRQDGDITGLRMTEQHRLRNAGGARMPEDVEDSEGLVVQGAQMFVSFESPHRVLEYNATEVRQLPSPRGFRRFSF NASFEALAQSPEGDLVLIAESPPRNKNVSRVWRWSGAEGWQGLGPYPEADGFLPVGADFGPDGALYVLERKFAKIGFRSR LRRFDLTAKGLGGGEILLNTPLARHDNLEGLSIWRTPSGNLRATMISDDNFFWVQRTELVEYDLPARP
Sequences:
>Translated_308_residues MRRRSFIRLASVAIGLLVALCAAALAASTVWSVTHADSNSARLVSSYRWHEDAPWFGGMSGLELSEDGTRFVAITDRSHL VKGEIIRQDGDITGLRMTEQHRLRNAGGARMPEDVEDSEGLVVQGAQMFVSFESPHRVLEYNATEVRQLPSPRGFRRFSF NASFEALAQSPEGDLVLIAESPPRNKNVSRVWRWSGAEGWQGLGPYPEADGFLPVGADFGPDGALYVLERKFAKIGFRSR LRRFDLTAKGLGGGEILLNTPLARHDNLEGLSIWRTPSGNLRATMISDDNFFWVQRTELVEYDLPARP >Mature_308_residues MRRRSFIRLASVAIGLLVALCAAALAASTVWSVTHADSNSARLVSSYRWHEDAPWFGGMSGLELSEDGTRFVAITDRSHL VKGEIIRQDGDITGLRMTEQHRLRNAGGARMPEDVEDSEGLVVQGAQMFVSFESPHRVLEYNATEVRQLPSPRGFRRFSF NASFEALAQSPEGDLVLIAESPPRNKNVSRVWRWSGAEGWQGLGPYPEADGFLPVGADFGPDGALYVLERKFAKIGFRSR LRRFDLTAKGLGGGEILLNTPLARHDNLEGLSIWRTPSGNLRATMISDDNFFWVQRTELVEYDLPARP
Specific function: Unknown
COG id: COG4246
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34217; Mature: 34217
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRSFIRLASVAIGLLVALCAAALAASTVWSVTHADSNSARLVSSYRWHEDAPWFGGMS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCCCCCCCC GLELSEDGTRFVAITDRSHLVKGEIIRQDGDITGLRMTEQHRLRNAGGARMPEDVEDSEG CCEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCC LVVQGAQMFVSFESPHRVLEYNATEVRQLPSPRGFRRFSFNASFEALAQSPEGDLVLIAE EEEECEEEEEEECCCCEEEECCHHHHHHCCCCCCCEEEECCCCHHHHHCCCCCCEEEEEC SPPRNKNVSRVWRWSGAEGWQGLGPYPEADGFLPVGADFGPDGALYVLERKFAKIGFRSR CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEHHHHHHHHHHH LRRFDLTAKGLGGGEILLNTPLARHDNLEGLSIWRTPSGNLRATMISDDNFFWVQRTELV HHHHCCEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECEEE EYDLPARP EECCCCCC >Mature Secondary Structure MRRRSFIRLASVAIGLLVALCAAALAASTVWSVTHADSNSARLVSSYRWHEDAPWFGGMS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCCCCCCCC GLELSEDGTRFVAITDRSHLVKGEIIRQDGDITGLRMTEQHRLRNAGGARMPEDVEDSEG CCEECCCCCEEEEEECCCCEEECEEEECCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCC LVVQGAQMFVSFESPHRVLEYNATEVRQLPSPRGFRRFSFNASFEALAQSPEGDLVLIAE EEEECEEEEEEECCCCEEEECCHHHHHHCCCCCCCEEEECCCCHHHHHCCCCCCEEEEEC SPPRNKNVSRVWRWSGAEGWQGLGPYPEADGFLPVGADFGPDGALYVLERKFAKIGFRSR CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEHHHHHHHHHHH LRRFDLTAKGLGGGEILLNTPLARHDNLEGLSIWRTPSGNLRATMISDDNFFWVQRTELV HHHHCCEECCCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECEEE EYDLPARP EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA