| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yhhQ [H]
Identifier: 99082505
GI number: 99082505
Start: 2800489
End: 2801121
Strand: Direct
Name: yhhQ [H]
Synonym: TM1040_2665
Alternate gene names: 99082505
Gene position: 2800489-2801121 (Clockwise)
Preceding gene: 99082504
Following gene: 99082506
Centisome position: 87.49
GC content: 63.03
Gene sequence:
>633_bases ATGACCCGCACCTATCTTCCTGGCGTTCTCGCCATGGCTGCCGTTGTGGTGGCCTCCAACATTCTCGTGCAATTCCTGTT CGGCAACTGGCTGACCTGGGGCGCGTTTACCTATCCCATCGCTTTCCTCGTTACCGATGTGACCAACCGCGTCTATGGCG CAGGCCCCGCGCGCAAGGTCGTGCTGGCCGGGTTTGTGGTCGGCGTGATCTGCTCGCTCATTGGCACGCAGATTATGGGC GAGTTCGGCCCGCTTGTGACCCTGCGCATCGCGGTGGCCTCTGGTCTGGCGTTCCTTTTGGCGCAGCTCACGGATGTGGC GATCTTTGCCAGCCTGCGCGGCGGCAAATGGTGGCGCGCGCCGTTGGCCTCGACGCTGATTGGCTCTTCGCTTGATACCG CGATCTTTTTCACCATCGCCTTCTCCGGCGCGCTGACCTTCCTTGAGCCCGCAAATGACGTCTCCTGGGCCGGTGAAATG CTGCCGCTTCTGGGCGCTGGTCCGGTTGCGCCCCTGTGGGTGTCGCTCGCCGTGGCCGACTGGCTGGTGAAACTGTCGCT GGCGCTGATCGCGCTGATCCCCTTCCGCCTGATTGTTGCGCGTTTAACGCAGGGCCAACCCAGCAAAGCGTGA
Upstream 100 bases:
>100_bases GCTTGCAATCGACTCTGGATCTGCATAAACGAGGCGATCTTTCGCGCTCCTGAGGGGGCGCACAAGTCTCCGCGACCTTG TCTAAAAAACGGTACTGTAC
Downstream 100 bases:
>100_bases TTTCGCGCGAATTTCATTTGGAGATCCGACTTTTCCGTGCCAACCTGAAGGCAACAGAAACAGAGAGAAAAGGAGGTGAT CCAGTGTCAAGAAAGGGATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MTRTYLPGVLAMAAVVVASNILVQFLFGNWLTWGAFTYPIAFLVTDVTNRVYGAGPARKVVLAGFVVGVICSLIGTQIMG EFGPLVTLRIAVASGLAFLLAQLTDVAIFASLRGGKWWRAPLASTLIGSSLDTAIFFTIAFSGALTFLEPANDVSWAGEM LPLLGAGPVAPLWVSLAVADWLVKLSLALIALIPFRLIVARLTQGQPSKA
Sequences:
>Translated_210_residues MTRTYLPGVLAMAAVVVASNILVQFLFGNWLTWGAFTYPIAFLVTDVTNRVYGAGPARKVVLAGFVVGVICSLIGTQIMG EFGPLVTLRIAVASGLAFLLAQLTDVAIFASLRGGKWWRAPLASTLIGSSLDTAIFFTIAFSGALTFLEPANDVSWAGEM LPLLGAGPVAPLWVSLAVADWLVKLSLALIALIPFRLIVARLTQGQPSKA >Mature_209_residues TRTYLPGVLAMAAVVVASNILVQFLFGNWLTWGAFTYPIAFLVTDVTNRVYGAGPARKVVLAGFVVGVICSLIGTQIMGE FGPLVTLRIAVASGLAFLLAQLTDVAIFASLRGGKWWRAPLASTLIGSSLDTAIFFTIAFSGALTFLEPANDVSWAGEML PLLGAGPVAPLWVSLAVADWLVKLSLALIALIPFRLIVARLTQGQPSKA
Specific function: Unknown
COG id: COG1738
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0862 [H]
Homologues:
Organism=Escherichia coli, GI1789882, Length=194, Percent_Identity=34.020618556701, Blast_Score=93, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003744 [H]
Pfam domain/function: PF02592 DUF165 [H]
EC number: NA
Molecular weight: Translated: 22193; Mature: 22061
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTYLPGVLAMAAVVVASNILVQFLFGNWLTWGAFTYPIAFLVTDVTNRVYGAGPARKV CCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH VLAGFVVGVICSLIGTQIMGEFGPLVTLRIAVASGLAFLLAQLTDVAIFASLRGGKWWRA HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHH PLASTLIGSSLDTAIFFTIAFSGALTFLEPANDVSWAGEMLPLLGAGPVAPLWVSLAVAD HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH WLVKLSLALIALIPFRLIVARLTQGQPSKA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TRTYLPGVLAMAAVVVASNILVQFLFGNWLTWGAFTYPIAFLVTDVTNRVYGAGPARKV CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH VLAGFVVGVICSLIGTQIMGEFGPLVTLRIAVASGLAFLLAQLTDVAIFASLRGGKWWRA HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHH PLASTLIGSSLDTAIFFTIAFSGALTFLEPANDVSWAGEMLPLLGAGPVAPLWVSLAVAD HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH WLVKLSLALIALIPFRLIVARLTQGQPSKA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]