| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082463
Identifier: 99082463
GI number: 99082463
Start: 2756189
End: 2757139
Strand: Direct
Name: 99082463
Synonym: TM1040_2623
Alternate gene names: NA
Gene position: 2756189-2757139 (Clockwise)
Preceding gene: 99082462
Following gene: 99082464
Centisome position: 86.11
GC content: 62.46
Gene sequence:
>951_bases ATGGCCAAGGCCTTCGCATCCCAAGGCGACATGAGCGAAAAGAAAATCTCCTTCACCGAGGTGGGCGAGGGACTTTATGC CTTCACCGCCGAGGGCGACCCGAATTCAGGTGTGATCATCGGCGATGACTCGGTGATGATCGTCGAGGCGCAGGCAACCC CGCGTCTGGCCAACAAGGTGATCGAATGTGTGCGCTCCGTGACCGACAAACCGATCAGCCATGTGGTGCTCACCCACTAC CACGCGGTGCGTGTGCTCGGGGCCTCGGCCTTTGGGGCCCAGAACATCATCATGTCCGACACGGCACGCGCCATGGTCGT CGAGCGCGGCCAGGAAGACTGGGACAGCGAATTCCAGCGATTCCCGCGCCTGTTCGAGGGTCATGAAAGCATCCCCGGCC TCACATGGCCGACGACCACGTTTTCGGACAGCATGACCGTCTACCTCGGCAACCGCCGTGTCGACATCAAGCATCTGGGC CGCGCCCATACCGCTGGCGACGCCGTGATCCATGTGCCGGATCAGAACGTCATGTTCACCGGCGACATCGTTGAATATCA CTCCGCCTGCTACTGCGGCGACGGGCATTTTGGCGACTGGGGCAAGACGCTCGACAACATCAAAGCCTATGACGTGGACG CCATCGCCCCCGGTCGTGGTGACGCGCTGGTCGGCAAGGACATGGTCAACGCCGCCATTGAAAACACCCGCGACTTTGTG GAAAGCACCTATCGCCCCGCAGCCAAGGTTGCCGCGCGTGGCGGATCGCTCAAGGAAGCATGGGACGCGGTGCGCGACGC CTGTGACCCCAAGTTCAAGGACTACGCGATCTACGAACACTGCCTGCCGTTCAACGTCGCCCGCGCCTATGACGAGGCCC GTGGCATCGACACCCCCCGCATCTGGACCGCCCAGCGCGATCTGGAGATGTGGGAGGCGCTGCAGTCCTGA
Upstream 100 bases:
>100_bases GATCCGTTTGCACGCTGACGGTTCCATCTTTCCTCAAATACCTCCGCCGGAGGCACCCCAACCTGACCTCCGGCGGACCA GACAAAAAGGATACGCAACC
Downstream 100 bases:
>100_bases TATCAGTCTCTAACCCATGGGTTAGAGACACATCACAGCCATTGGCGGCCTTGACCGCCCCTGCACCGGTCCCCCACCGA GGGACCGGCCCAGTACCCGC
Product: beta-lactamase-like
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Beta-Lactamase-Like; Beta Lactamase; Cyclase; Beta-Lactamase; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase Class B; Polyketide Cyclase; Secreted Hydrolase; Metallo-Beta-Lactamase; Zn-Dependent Hydrolase; Dehydrase; Metallo-Beta-Lactamase Superfamily; Beta Lactamase SoxH-Like Protein; Zn-Dependent Hydrolase Glyoxylase; Glyoxylase-Like Zinc-Dependent Hydrolase; Na-Translocating NADH-Quinone Reductase Subunit A; Metallo-Beta-Lactamase Domain-Containing Protein; Cyclase/Dehydrase; Bifunctional HHDD Isomerase/Cyclase/Dehydrase; Beta-Lactamase Domain Containing Protein; Rhodanese Domain Protein
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MAKAFASQGDMSEKKISFTEVGEGLYAFTAEGDPNSGVIIGDDSVMIVEAQATPRLANKVIECVRSVTDKPISHVVLTHY HAVRVLGASAFGAQNIIMSDTARAMVVERGQEDWDSEFQRFPRLFEGHESIPGLTWPTTTFSDSMTVYLGNRRVDIKHLG RAHTAGDAVIHVPDQNVMFTGDIVEYHSACYCGDGHFGDWGKTLDNIKAYDVDAIAPGRGDALVGKDMVNAAIENTRDFV ESTYRPAAKVAARGGSLKEAWDAVRDACDPKFKDYAIYEHCLPFNVARAYDEARGIDTPRIWTAQRDLEMWEALQS
Sequences:
>Translated_316_residues MAKAFASQGDMSEKKISFTEVGEGLYAFTAEGDPNSGVIIGDDSVMIVEAQATPRLANKVIECVRSVTDKPISHVVLTHY HAVRVLGASAFGAQNIIMSDTARAMVVERGQEDWDSEFQRFPRLFEGHESIPGLTWPTTTFSDSMTVYLGNRRVDIKHLG RAHTAGDAVIHVPDQNVMFTGDIVEYHSACYCGDGHFGDWGKTLDNIKAYDVDAIAPGRGDALVGKDMVNAAIENTRDFV ESTYRPAAKVAARGGSLKEAWDAVRDACDPKFKDYAIYEHCLPFNVARAYDEARGIDTPRIWTAQRDLEMWEALQS >Mature_315_residues AKAFASQGDMSEKKISFTEVGEGLYAFTAEGDPNSGVIIGDDSVMIVEAQATPRLANKVIECVRSVTDKPISHVVLTHYH AVRVLGASAFGAQNIIMSDTARAMVVERGQEDWDSEFQRFPRLFEGHESIPGLTWPTTTFSDSMTVYLGNRRVDIKHLGR AHTAGDAVIHVPDQNVMFTGDIVEYHSACYCGDGHFGDWGKTLDNIKAYDVDAIAPGRGDALVGKDMVNAAIENTRDFVE STYRPAAKVAARGGSLKEAWDAVRDACDPKFKDYAIYEHCLPFNVARAYDEARGIDTPRIWTAQRDLEMWEALQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34830; Mature: 34699
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKAFASQGDMSEKKISFTEVGEGLYAFTAEGDPNSGVIIGDDSVMIVEAQATPRLANKV CCCCCCCCCCCCHHEEEHHHHCCCEEEEEECCCCCCCEEECCCCEEEEECCCCHHHHHHH IECVRSVTDKPISHVVLTHYHAVRVLGASAFGAQNIIMSDTARAMVVERGQEDWDSEFQR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCHHHHHHHH FPRLFEGHESIPGLTWPTTTFSDSMTVYLGNRRVDIKHLGRAHTAGDAVIHVPDQNVMFT HHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEHHHCCCCCCCCCEEEEECCCCEEEE GDIVEYHSACYCGDGHFGDWGKTLDNIKAYDVDAIAPGRGDALVGKDMVNAAIENTRDFV CHHHHHCCEEEECCCCCCCHHHHHHCCEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHH ESTYRPAAKVAARGGSLKEAWDAVRDACDPKFKDYAIYEHCLPFNVARAYDEARGIDTPR HHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCC IWTAQRDLEMWEALQS EEECHHHHHHHHHHCC >Mature Secondary Structure AKAFASQGDMSEKKISFTEVGEGLYAFTAEGDPNSGVIIGDDSVMIVEAQATPRLANKV CCCCCCCCCCCHHEEEHHHHCCCEEEEEECCCCCCCEEECCCCEEEEECCCCHHHHHHH IECVRSVTDKPISHVVLTHYHAVRVLGASAFGAQNIIMSDTARAMVVERGQEDWDSEFQR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCHHHHHHHH FPRLFEGHESIPGLTWPTTTFSDSMTVYLGNRRVDIKHLGRAHTAGDAVIHVPDQNVMFT HHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEHHHCCCCCCCCCEEEEECCCCEEEE GDIVEYHSACYCGDGHFGDWGKTLDNIKAYDVDAIAPGRGDALVGKDMVNAAIENTRDFV CHHHHHCCEEEECCCCCCCHHHHHHCCEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHH ESTYRPAAKVAARGGSLKEAWDAVRDACDPKFKDYAIYEHCLPFNVARAYDEARGIDTPR HHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCC IWTAQRDLEMWEALQS EEECHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA