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The map label for this gene is rimM

Identifier: 99082449

GI number: 99082449

Start: 2744391

End: 2744906

Strand: Direct

Name: rimM

Synonym: TM1040_2609

Alternate gene names: 99082449

Gene position: 2744391-2744906 (Clockwise)

Preceding gene: 99082448

Following gene: 99082451

Centisome position: 85.74

GC content: 64.15

Gene sequence:

>516_bases
ATGAGCGATGTGAGTGAAGATCTGATTTGCGTGGGCGCTCTGGCGGGGTCCTTTGGCGTGCGCGGCGAGGTCCGCCTCAA
GAGCTTTTGCGCCAACGCGGAAGAGATCGAAGACTATTCCCCCCTCCTGGGCGCGGACGGTCAGACCCGCTACACGCTGG
CGATCACCCGCGCGATCAAAGGCGGCTTTGCCGCCCGCATCGTGGATGTCGAAACCAAGGAGCAGGCCGATGCGCTGAAA
GGCGTGCAGCTCTATGCGCCGCGCGACCGTTTGCCCTCGCTGCCCGATGATGAGTTCTACCACGCCGATCTGATCGGGCT
TGAGGTCTACGACACCGGCGGCACGCTCCTGGGGCGCGTGAAGGCGGTGCAGAACTACGGCGCGGATGATCTCTTGGAAC
TGCATGGTCCGGGGCTCTCGGCCACGGTGCTTCTGCCCTTTACCAAGGCGGCGGTGCCGACGGTGGACCTCTCTCAGGGC
CGCATCATCGCAGACCCACCAGCGGGCGTGTTTTAA

Upstream 100 bases:

>100_bases
GTTCTTTATGAACGCAGCGGCGCGCGCGAGCGATGCGCTGCCGCAGGCGGTGATTGGACAAGAACAGAGACGGGGACCGG
CATGATCTGCCGGATGTGAC

Downstream 100 bases:

>100_bases
TCACGTCTGAAGCTGCTGCCTCAGCACTTCAAACATCGAGACTATCCGCTCAATTCGGCGCTGCTGCGACGCGCTGCGGT
GTTCCTTTTCTACTGGCATC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSDVSEDLICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLGADGQTRYTLAITRAIKGGFAARIVDVETKEQADALK
GVQLYAPRDRLPSLPDDEFYHADLIGLEVYDTGGTLLGRVKAVQNYGADDLLELHGPGLSATVLLPFTKAAVPTVDLSQG
RIIADPPAGVF

Sequences:

>Translated_171_residues
MSDVSEDLICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLGADGQTRYTLAITRAIKGGFAARIVDVETKEQADALK
GVQLYAPRDRLPSLPDDEFYHADLIGLEVYDTGGTLLGRVKAVQNYGADDLLELHGPGLSATVLLPFTKAAVPTVDLSQG
RIIADPPAGVF
>Mature_170_residues
SDVSEDLICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLGADGQTRYTLAITRAIKGGFAARIVDVETKEQADALKG
VQLYAPRDRLPSLPDDEFYHADLIGLEVYDTGGTLLGRVKAVQNYGADDLLELHGPGLSATVLLPFTKAAVPTVDLSQGR
IIADPPAGVF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SILST (Q1GDC5)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_614603.1
- ProteinModelPortal:   Q1GDC5
- SMR:   Q1GDC5
- STRING:   Q1GDC5
- GeneID:   4077520
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_2609
- NMPDR:   fig|292414.1.peg.81
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- PhylomeDB:   Q1GDC5
- ProtClustDB:   PRK13828
- BioCyc:   SSP292414:TM1040_2609-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18152; Mature: 18021

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVSEDLICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLGADGQTRYTLAITRAIK
CCCCCCHHEEEEEHHCCCCCCCEEEHHHHHCCHHHHHCCCCCCCCCCCEEEEEEEEEHHC
GGFAARIVDVETKEQADALKGVQLYAPRDRLPSLPDDEFYHADLIGLEVYDTGGTLLGRV
CCCEEEEEECCCHHHHHHHCCEEEECCHHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHH
KAVQNYGADDLLELHGPGLSATVLLPFTKAAVPTVDLSQGRIIADPPAGVF
HHHHHCCCCCCHHHCCCCCEEEEEEEECCCCCCEEECCCCEEEECCCCCCC
>Mature Secondary Structure 
SDVSEDLICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLGADGQTRYTLAITRAIK
CCCCCHHEEEEEHHCCCCCCCEEEHHHHHCCHHHHHCCCCCCCCCCCEEEEEEEEEHHC
GGFAARIVDVETKEQADALKGVQLYAPRDRLPSLPDDEFYHADLIGLEVYDTGGTLLGRV
CCCEEEEEECCCHHHHHHHCCEEEECCHHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHH
KAVQNYGADDLLELHGPGLSATVLLPFTKAAVPTVDLSQGRIIADPPAGVF
HHHHHCCCCCCHHHCCCCCEEEEEEEECCCCCCEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA