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The map label for this gene is yhjC [H]

Identifier: 99082439

GI number: 99082439

Start: 2736583

End: 2737461

Strand: Reverse

Name: yhjC [H]

Synonym: TM1040_2599

Alternate gene names: 99082439

Gene position: 2737461-2736583 (Counterclockwise)

Preceding gene: 99082441

Following gene: 99082438

Centisome position: 85.52

GC content: 62.0

Gene sequence:

>879_bases
GTGGAAAATTGGGATGAGGTACGCACCGCCTATCAGGTGGCGCGCTTGGGCACTGTGAGTGGTGCAGCAGATGTTCTGGG
CGTGCATCACGCCACGGTGATCCGGCATATCGACGCGATCGAAGCCCGACTGGGCGTGAAGCTGTTCCAGCGACATGCCC
GTGGGTATACGGCCACCGAGGCCGGTCTTGACCTGTTGCGGGTGGCGCAGGCCACGGACGATCAGTTCAGCCAACTGGTC
GGGCGCCTCAAGGGGCAGGGCGATGAGGTCTCTGGGGAGCTGGTGGTGACATCCCTGTCGTCCATGGCGCCAATGTTGGC
GCCGGCGCTTGCAGAGTTTCAGCAGCTGCATCCTGATCTTGTGATCCGCTATCTGACCGGGGATCGCCTGTTCCGGCTGG
AATATGGCGAGGCGCATGTGGCGTTGCGCGCGGGCGCTGCCCCCGAGCAGCCCGACAATGTTGTGCAGCCCTTCGTGGCC
CAGCGGCTCGCGCTCTATGCCTCGCGCGAGTACGTCGAGCGCCATGGCATGCTGAAGGGGCAAGATGACATGGTGAACCA
TCGTTTTATTGCCAGCGACAATGAGAATACGCGCGCGCCCTTCGAGCGCTGGTTGCGTTCCACGATCCCGGCCGAGAATA
TCGTCTTTCGCTGCTCTGACGCCGTGGCTGGGCATCAGGCCATTCGGGCAGGGGCTGGGATCGGGTTTGTCTCCCTCTGG
GAGGCGGCAAGCAGTCCTGATCTGGTGATGATGATGGATCCCCACGATGAGTGGTCGGGCAAGATCTGGCTCGTGACCCA
TGTGGATCTCCACCGCACCAACAAGGTGCAGAGTTTTGTGCGCTTCTTGAAAGAGCACGCCAAATCCTGGCCGCAGTGA

Upstream 100 bases:

>100_bases
AAGATGCGCATTTGCACATTCGAACACAATTTGTGATATTCAACAAAAGTTGTGCGTTTGCGCGCAGATTGAGACAGAAA
AGCATCGGCAGGGGGATCAG

Downstream 100 bases:

>100_bases
GACAGAGCATGGAATTGGCCACGCGGCCGCGCGGTCTGCGCGACAGTCACAAGGGGCATCTTGCGATGCTCGCATTCTCA
GCCTTGGTGGCCGGGTCGTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MENWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTATEAGLDLLRVAQATDDQFSQLV
GRLKGQGDEVSGELVVTSLSSMAPMLAPALAEFQQLHPDLVIRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQPFVA
QRLALYASREYVERHGMLKGQDDMVNHRFIASDNENTRAPFERWLRSTIPAENIVFRCSDAVAGHQAIRAGAGIGFVSLW
EAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKVQSFVRFLKEHAKSWPQ

Sequences:

>Translated_292_residues
MENWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTATEAGLDLLRVAQATDDQFSQLV
GRLKGQGDEVSGELVVTSLSSMAPMLAPALAEFQQLHPDLVIRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQPFVA
QRLALYASREYVERHGMLKGQDDMVNHRFIASDNENTRAPFERWLRSTIPAENIVFRCSDAVAGHQAIRAGAGIGFVSLW
EAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKVQSFVRFLKEHAKSWPQ
>Mature_292_residues
MENWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTATEAGLDLLRVAQATDDQFSQLV
GRLKGQGDEVSGELVVTSLSSMAPMLAPALAEFQQLHPDLVIRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQPFVA
QRLALYASREYVERHGMLKGQDDMVNHRFIASDNENTRAPFERWLRSTIPAENIVFRCSDAVAGHQAIRAGAGIGFVSLW
EAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKVQSFVRFLKEHAKSWPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=192, Percent_Identity=28.6458333333333, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787128, Length=245, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32555; Mature: 32555

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTATE
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AGLDLLRVAQATDDQFSQLVGRLKGQGDEVSGELVVTSLSSMAPMLAPALAEFQQLHPDL
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VIRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQPFVAQRLALYASREYVERHGMLKG
EEEEECCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QDDMVNHRFIASDNENTRAPFERWLRSTIPAENIVFRCSDAVAGHQAIRAGAGIGFVSLW
CCHHHCCEEEECCCCCCCCHHHHHHHHHCCHHHEEEEECCHHHHHHHHHHCCCCCHHHHH
EAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKVQSFVRFLKEHAKSWPQ
HCCCCCCEEEEECCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MENWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTATE
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AGLDLLRVAQATDDQFSQLVGRLKGQGDEVSGELVVTSLSSMAPMLAPALAEFQQLHPDL
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VIRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQPFVAQRLALYASREYVERHGMLKG
EEEEECCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QDDMVNHRFIASDNENTRAPFERWLRSTIPAENIVFRCSDAVAGHQAIRAGAGIGFVSLW
CCHHHCCEEEECCCCCCCCHHHHHHHHHCCHHHEEEEECCHHHHHHHHHHCCCCCHHHHH
EAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKVQSFVRFLKEHAKSWPQ
HCCCCCCEEEEECCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]