| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082335
Identifier: 99082335
GI number: 99082335
Start: 2635844
End: 2638015
Strand: Direct
Name: 99082335
Synonym: TM1040_2495
Alternate gene names: NA
Gene position: 2635844-2638015 (Clockwise)
Preceding gene: 99082333
Following gene: 99082336
Centisome position: 82.35
GC content: 59.02
Gene sequence:
>2172_bases ATGTCCCTGCGCCTAGTGTGCCTGACCTCCGCCCTCGCGCTGACCGCCGGTTTTGCGCAGGCTGAAAAAGCCTTCAACCG GATCGCGTCTTTCCCCGTCATCAAGAACATGGCCGAAGGTGCCGACCAGAGCCGCGAAAGCTCGCCCGAGATCATCGACG TGACCGCCGATGGCATGACGCTGGTCTATACCGACAGCCCGCTGGGCGCGCTTGGGATGATCGACATCACCGATGCCGCC AACCCGGTGCCCAAAGGCAATATCGCCCTTCCGGGCGAGCCCACCTCGGTCGCAGTGGTCGGTACCATCGCATATGTCGG GGTCAACACCTCGGAGAGCTACACCCAGCCTTCCGGGCAAGTCATGGCCTTTGACACCGCAACAGGCGCGGAACTTGCCT CCTGTGATTTGGGCGGTCAGCCGGACTCCCTCGCAAAATCCAAGGACGGCGCCTTCCTGTCCATCGCAATCGAAAACGAA CGCGACGAAGACCTGAATGACGGGATCATTCCGCAATTGCCCGCAGGCAACCTCGTTATGATCAACACCACGCAAGACGG CCTGAACTGCGCCAGCATGAAGATGGTGGATCTGACCGGTCTGGCCGAGATCGCAGGATCGGACCCGGAGCCAGAGTATG TCTCGATCAACAACCTCGACGAGACGGTTGTGACGCTGCAAGAGAACAACCACATGGTCGTCGTGTCCAGGGATGGTGAG ATTCTCAGTCACTTCTCCGCAGGCGCCGTGGACCTCGATGGCATTGATGCCACCGACGAGCGCGGTGCACTGATCTTTGA CGAAAGCCAGAAGGGGCGCCTGCGCGAACCTGATGCTGTGACCTGGATTGACGCAGATCACTTTGCCACCGCAAACGAGG GGGACTACAACGGCGGTTCGCGCGGTTGGACCATCTTCCACAAAGACGGCTCTGTGGTCTATGACTCTGGCGTTTCTTTT GAGCATGCGATCATCCAGATCGGCCACTACCCGGACAAGCGTTCCGATGCCAAAGGTGTCGAACCGGAATCTGTGACCTT CGCAGAGTTTGACGGCACACCTTTCGTGTTTGTCGGGGCAGAGCGCGCTTCGGTTGTTGGCGTCTATGACGTCACCGACC CGGCAAAACCGGTTCTGACACAGTTGCTGCCCTCTGGTACCGGCCCCGAAGGCTATGTGACCATTCCCGAGCGCGGCCTT CTTGTTTCAGCCAACGAGAAAGACCTCCTCGAAGACGGTGGCGCACGGGCGCATGTGATGCTCTTTGAGCTTCAGGATGG CGCAGCCACATATCCTCATCTGACCTCGGCAGGAGCCAAAGAGCTGATCGGCTGGGGCGCCATCTCCGGCATGGTTGCGG ATGAAGACGGTATGATCTGGGCGGTCAATGATAGCTTTTACGGCTTCCAGCCCTCGATCTTCAAGATTGACCCCTCTCAG ACCCCAGCGCGCATCACCGATGTGATCCGCATTCATCGCGCCAATGGCGACGCTGCGCAAAAACTCGACCTCGAAGGGAT CACGCTTGATGGCGAAGGCGGCTTCTATGTGGCGTCCGAGGGCCGCACGGAACGCGCGATCCCGCACGCGATCTATCACG TCAGCGCCGAGGGCCTGATCAAAACCAACAAGGGTGAAATCGCGATCCCCGCAGAGCTGCAGTCCGTCGAGAAGCGCTTT GGCTTTGAAGGCATCACCAAGGTTGGCAACACGCTCTGGATGGCGGTGCAGCGTGAGTGGAAAGACGATCCCGAAAACCA TGTAAAGCTGGTTTCCTACAATCTGGATACCAAGGAATGGGGCGCCGTTCTTTATCCAAAGGCAGCGCCGGCCACCGGCT GGGTTGGTCTGTCGGAAATCGTGGCGCATGGCGATCATGTCTATGTGATTGAGCGCGACAACCAGCATGATGACCGCGCA GTCACCAAGAAGATCTATCGCATTGCGCTCTCGGATATGGTTCCTGCCCCGCTTGGCAGCGATCTCCCTGTCGTGACAAA GGAAGAGGTCCGCGACCTGCTGCCTGACCTGAAATCCACCGGCGGCTATGTGCTCGACAAGGTTGAAGGTTTGGCCATCC TGGCAGACGGCACCGCTTGGGTGTCGACCGACAATGACGGTGTCGATGACAGCTCTGGCGAGACGATGTTCTGGTCGTTC AAGGTCGACTGA
Upstream 100 bases:
>100_bases GCTTACACAGACGTCACGAAACATACAAAAAACCGTTGCGAATAGTTTGCACAGCGCGGGCATGGCCTTGGCATCGATTT CATTCCTACAGGAGCTGCCG
Downstream 100 bases:
>100_bases TCCGACCCGCGATCTGTCCGGCGCCTGCCATCATGGCGCCGACGTCGCCGCACAGCAAAGGGGTCCCTAGCGGGGCCTCT TTTTTGCATCTTACGTCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Protein; Endonuclease/Exonuclease/Phosphatase; Alkaline Phosphatase-Like Protein; Alkaline Phosphatase Protein; 5-Nucleotidase Domain-Containing Protein; Atypical Alkaline Phosphatase With Phytase-Like Insertion; 5-Nucleotidase Domain Protein
Number of amino acids: Translated: 723; Mature: 722
Protein sequence:
>723_residues MSLRLVCLTSALALTAGFAQAEKAFNRIASFPVIKNMAEGADQSRESSPEIIDVTADGMTLVYTDSPLGALGMIDITDAA NPVPKGNIALPGEPTSVAVVGTIAYVGVNTSESYTQPSGQVMAFDTATGAELASCDLGGQPDSLAKSKDGAFLSIAIENE RDEDLNDGIIPQLPAGNLVMINTTQDGLNCASMKMVDLTGLAEIAGSDPEPEYVSINNLDETVVTLQENNHMVVVSRDGE ILSHFSAGAVDLDGIDATDERGALIFDESQKGRLREPDAVTWIDADHFATANEGDYNGGSRGWTIFHKDGSVVYDSGVSF EHAIIQIGHYPDKRSDAKGVEPESVTFAEFDGTPFVFVGAERASVVGVYDVTDPAKPVLTQLLPSGTGPEGYVTIPERGL LVSANEKDLLEDGGARAHVMLFELQDGAATYPHLTSAGAKELIGWGAISGMVADEDGMIWAVNDSFYGFQPSIFKIDPSQ TPARITDVIRIHRANGDAAQKLDLEGITLDGEGGFYVASEGRTERAIPHAIYHVSAEGLIKTNKGEIAIPAELQSVEKRF GFEGITKVGNTLWMAVQREWKDDPENHVKLVSYNLDTKEWGAVLYPKAAPATGWVGLSEIVAHGDHVYVIERDNQHDDRA VTKKIYRIALSDMVPAPLGSDLPVVTKEEVRDLLPDLKSTGGYVLDKVEGLAILADGTAWVSTDNDGVDDSSGETMFWSF KVD
Sequences:
>Translated_723_residues MSLRLVCLTSALALTAGFAQAEKAFNRIASFPVIKNMAEGADQSRESSPEIIDVTADGMTLVYTDSPLGALGMIDITDAA NPVPKGNIALPGEPTSVAVVGTIAYVGVNTSESYTQPSGQVMAFDTATGAELASCDLGGQPDSLAKSKDGAFLSIAIENE RDEDLNDGIIPQLPAGNLVMINTTQDGLNCASMKMVDLTGLAEIAGSDPEPEYVSINNLDETVVTLQENNHMVVVSRDGE ILSHFSAGAVDLDGIDATDERGALIFDESQKGRLREPDAVTWIDADHFATANEGDYNGGSRGWTIFHKDGSVVYDSGVSF EHAIIQIGHYPDKRSDAKGVEPESVTFAEFDGTPFVFVGAERASVVGVYDVTDPAKPVLTQLLPSGTGPEGYVTIPERGL LVSANEKDLLEDGGARAHVMLFELQDGAATYPHLTSAGAKELIGWGAISGMVADEDGMIWAVNDSFYGFQPSIFKIDPSQ TPARITDVIRIHRANGDAAQKLDLEGITLDGEGGFYVASEGRTERAIPHAIYHVSAEGLIKTNKGEIAIPAELQSVEKRF GFEGITKVGNTLWMAVQREWKDDPENHVKLVSYNLDTKEWGAVLYPKAAPATGWVGLSEIVAHGDHVYVIERDNQHDDRA VTKKIYRIALSDMVPAPLGSDLPVVTKEEVRDLLPDLKSTGGYVLDKVEGLAILADGTAWVSTDNDGVDDSSGETMFWSF KVD >Mature_722_residues SLRLVCLTSALALTAGFAQAEKAFNRIASFPVIKNMAEGADQSRESSPEIIDVTADGMTLVYTDSPLGALGMIDITDAAN PVPKGNIALPGEPTSVAVVGTIAYVGVNTSESYTQPSGQVMAFDTATGAELASCDLGGQPDSLAKSKDGAFLSIAIENER DEDLNDGIIPQLPAGNLVMINTTQDGLNCASMKMVDLTGLAEIAGSDPEPEYVSINNLDETVVTLQENNHMVVVSRDGEI LSHFSAGAVDLDGIDATDERGALIFDESQKGRLREPDAVTWIDADHFATANEGDYNGGSRGWTIFHKDGSVVYDSGVSFE HAIIQIGHYPDKRSDAKGVEPESVTFAEFDGTPFVFVGAERASVVGVYDVTDPAKPVLTQLLPSGTGPEGYVTIPERGLL VSANEKDLLEDGGARAHVMLFELQDGAATYPHLTSAGAKELIGWGAISGMVADEDGMIWAVNDSFYGFQPSIFKIDPSQT PARITDVIRIHRANGDAAQKLDLEGITLDGEGGFYVASEGRTERAIPHAIYHVSAEGLIKTNKGEIAIPAELQSVEKRFG FEGITKVGNTLWMAVQREWKDDPENHVKLVSYNLDTKEWGAVLYPKAAPATGWVGLSEIVAHGDHVYVIERDNQHDDRAV TKKIYRIALSDMVPAPLGSDLPVVTKEEVRDLLPDLKSTGGYVLDKVEGLAILADGTAWVSTDNDGVDDSSGETMFWSFK VD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77328; Mature: 77197
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRLVCLTSALALTAGFAQAEKAFNRIASFPVIKNMAEGADQSRESSPEIIDVTADGMT CCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEEECCCEE LVYTDSPLGALGMIDITDAANPVPKGNIALPGEPTSVAVVGTIAYVGVNTSESYTQPSGQ EEEECCCCCCEEEEEECCCCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCC VMAFDTATGAELASCDLGGQPDSLAKSKDGAFLSIAIENERDEDLNDGIIPQLPAGNLVM EEEEECCCCCCEEECCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEE INTTQDGLNCASMKMVDLTGLAEIAGSDPEPEYVSINNLDETVVTLQENNHMVVVSRDGE EECCCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCH ILSHFSAGAVDLDGIDATDERGALIFDESQKGRLREPDAVTWIDADHFATANEGDYNGGS HHHHCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC RGWTIFHKDGSVVYDSGVSFEHAIIQIGHYPDKRSDAKGVEPESVTFAEFDGTPFVFVGA CCEEEEECCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEEEC ERASVVGVYDVTDPAKPVLTQLLPSGTGPEGYVTIPERGLLVSANEKDLLEDGGARAHVM CCCEEEEEEECCCCHHHHHHHHCCCCCCCCCEEECCCCCEEEECCCHHHHHCCCCEEEEE LFELQDGAATYPHLTSAGAKELIGWGAISGMVADEDGMIWAVNDSFYGFQPSIFKIDPSQ EEEECCCCCCCCCCCCCCHHHHHHHHHHCCEEECCCCEEEEECCCCCCCCCEEEEECCCC TPARITDVIRIHRANGDAAQKLDLEGITLDGEGGFYVASEGRTERAIPHAIYHVSAEGLI CCHHHEEEEEEEECCCCHHHEEECCEEEEECCCCEEEECCCCCCCCCCEEEEEEECCCEE KTNKGEIAIPAELQSVEKRFGFEGITKVGNTLWMAVQREWKDDPENHVKLVSYNLDTKEW EECCCCEEECHHHHHHHHHHCCHHHHHHCCEEEEEEHHHCCCCCCCCEEEEEEECCCHHC GAVLYPKAAPATGWVGLSEIVAHGDHVYVIERDNQHDDRAVTKKIYRIALSDMVPAPLGS CEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC DLPVVTKEEVRDLLPDLKSTGGYVLDKVEGLAILADGTAWVSTDNDGVDDSSGETMFWSF CCCEECHHHHHHHHHHHHHCCCEEEECCCCEEEEECCEEEEECCCCCCCCCCCCEEEEEE KVD EEC >Mature Secondary Structure SLRLVCLTSALALTAGFAQAEKAFNRIASFPVIKNMAEGADQSRESSPEIIDVTADGMT CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEEECCCEE LVYTDSPLGALGMIDITDAANPVPKGNIALPGEPTSVAVVGTIAYVGVNTSESYTQPSGQ EEEECCCCCCEEEEEECCCCCCCCCCCEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCC VMAFDTATGAELASCDLGGQPDSLAKSKDGAFLSIAIENERDEDLNDGIIPQLPAGNLVM EEEEECCCCCCEEECCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEE INTTQDGLNCASMKMVDLTGLAEIAGSDPEPEYVSINNLDETVVTLQENNHMVVVSRDGE EECCCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCH ILSHFSAGAVDLDGIDATDERGALIFDESQKGRLREPDAVTWIDADHFATANEGDYNGGS HHHHCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC RGWTIFHKDGSVVYDSGVSFEHAIIQIGHYPDKRSDAKGVEPESVTFAEFDGTPFVFVGA CCEEEEECCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEEEC ERASVVGVYDVTDPAKPVLTQLLPSGTGPEGYVTIPERGLLVSANEKDLLEDGGARAHVM CCCEEEEEEECCCCHHHHHHHHCCCCCCCCCEEECCCCCEEEECCCHHHHHCCCCEEEEE LFELQDGAATYPHLTSAGAKELIGWGAISGMVADEDGMIWAVNDSFYGFQPSIFKIDPSQ EEEECCCCCCCCCCCCCCHHHHHHHHHHCCEEECCCCEEEEECCCCCCCCCEEEEECCCC TPARITDVIRIHRANGDAAQKLDLEGITLDGEGGFYVASEGRTERAIPHAIYHVSAEGLI CCHHHEEEEEEEECCCCHHHEEECCEEEEECCCCEEEECCCCCCCCCCEEEEEEECCCEE KTNKGEIAIPAELQSVEKRFGFEGITKVGNTLWMAVQREWKDDPENHVKLVSYNLDTKEW EECCCCEEECHHHHHHHHHHCCHHHHHHCCEEEEEEHHHCCCCCCCCEEEEEEECCCHHC GAVLYPKAAPATGWVGLSEIVAHGDHVYVIERDNQHDDRAVTKKIYRIALSDMVPAPLGS CEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC DLPVVTKEEVRDLLPDLKSTGGYVLDKVEGLAILADGTAWVSTDNDGVDDSSGETMFWSF CCCEECHHHHHHHHHHHHHCCCEEEECCCCEEEEECCEEEEECCCCCCCCCCCCEEEEEE KVD EEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA