Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082330

Identifier: 99082330

GI number: 99082330

Start: 2630666

End: 2631304

Strand: Reverse

Name: 99082330

Synonym: TM1040_2490

Alternate gene names: NA

Gene position: 2631304-2630666 (Counterclockwise)

Preceding gene: 99082331

Following gene: 99082329

Centisome position: 82.2

GC content: 55.09

Gene sequence:

>639_bases
ATGGCCTATGTGAAGTGGATTTTCATTCTGATCTTCTGGCTCTTTGTTGGGAGCTTTCTGCACTACACGTTGCCCCAATA
TGACGTCGTGCGCATCGTCAACACTTATGAAGAGCGCAAGGAGCTGGGCGATTGGACGCGTATGTTCTGGTCGACGCCAG
ACAGCCAAAGCGCCGCGCTCCTCAATCGCGATGTACAGTTCATTCAGGCGGTGCGCCCCAATGGCGATGCTATTGTCTAT
CGCAACGAGGACACCGGCTGGAATTGGCCGCCCTATTTCAAATTCGACACCGCCAATCTCTACACAGAGGCGAATGATGC
GATTTCCACCAAAGACGACCCGGAGTGGGTACGGATCATGCATTATGGCTGGCGCAGTCAGCTTCTGACATCGTTCCCCA
ATGCGGTGTCCATCTCTCCGGCGGCGGGACCGGATGACAAGCCGATCAATTGGATTTCGATCAGTATTCTGGTGCTGCTC
GCGGCTGTGAGCTGGGCGATATTTGTGCGTCTGCGTCGCTTCAAACGCAATCGGTTGGATCCGTTGTTCGAGAACGTCGA
AGATGGATTCTATGCCGCCGGGGATGCGATTGATGACCGCACCCGTGGCCTGCGGCGCTGGTTTGGTCGAAAGTCTTGA

Upstream 100 bases:

>100_bases
ATCTCGGGCTCAGTCGCCGCAAAATTTCGCCTTATGTCATTGCTTTGCGACGCCGCAGATCCGACATTAGATAAGGTGGC
GCAGTGTTTGAGGGGGCAAA

Downstream 100 bases:

>100_bases
CGCGAAACCGCATCCTCCAACGCGCGGTTTCGTTTGAAAGTCCTACTTGGTTTTTGCCGTGAATATGGGTCCTGTGTCCT
GTGCCGATTAATTGGGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MAYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAALLNRDVQFIQAVRPNGDAIVY
RNEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIMHYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLL
AAVSWAIFVRLRRFKRNRLDPLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS

Sequences:

>Translated_212_residues
MAYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAALLNRDVQFIQAVRPNGDAIVY
RNEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIMHYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLL
AAVSWAIFVRLRRFKRNRLDPLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS
>Mature_211_residues
AYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAALLNRDVQFIQAVRPNGDAIVYR
NEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIMHYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLLA
AVSWAIFVRLRRFKRNRLDPLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011088 [H]

Pfam domain/function: PF07509 DUF1523 [H]

EC number: NA

Molecular weight: Translated: 24856; Mature: 24725

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAAL
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LNRDVQFIQAVRPNGDAIVYRNEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIM
HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCHHEECCCCCCCCCCCHHHHHHH
HYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLLAAVSWAIFVRLRRFKRNRLD
HHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS
HHHHHHHCCCEECCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AYVKWIFILIFWLFVGSFLHYTLPQYDVVRIVNTYEERKELGDWTRMFWSTPDSQSAAL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LNRDVQFIQAVRPNGDAIVYRNEDTGWNWPPYFKFDTANLYTEANDAISTKDDPEWVRIM
HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCHHEECCCCCCCCCCCHHHHHHH
HYGWRSQLLTSFPNAVSISPAAGPDDKPINWISISILVLLAAVSWAIFVRLRRFKRNRLD
HHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PLFENVEDGFYAAGDAIDDRTRGLRRWFGRKS
HHHHHHHCCCEECCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]