Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082328

Identifier: 99082328

GI number: 99082328

Start: 2628115

End: 2629692

Strand: Direct

Name: 99082328

Synonym: TM1040_2488

Alternate gene names: NA

Gene position: 2628115-2629692 (Clockwise)

Preceding gene: 99082326

Following gene: 99082333

Centisome position: 82.1

GC content: 57.29

Gene sequence:

>1578_bases
ATGGCAAAAATCGCCTATATTCTGCTCTGTCACAAGGATCCGGAGGCCATCATTCAGCAGGCCAACCGGCTCACTGCGAC
CGGCGATTTTATGGCGATCCACTTTGATGCCCGTGCCAAGACCCGCGACTATCGTGCTATCCGCTCAGCGCTTTCAGACA
ATCCCAACGTGACGTTCGCCAAGCGTCGGGTGAAATGTGGTTGGGGCGAATGGTCCTTGGTGCGCGCCACGCTCAATGCG
CTGGAGGCAGCTGTCGACGAGTTCCCGCGCGCAACGCATTTTTATATGCTGTCGGGGGATTGCATGGCGATCAAGACGGC
GCAATACGCGCGCGCCTTTCTCGATCAGCACGACAAGGATTTCATCGAGAGCTTTGATTTCTTCGAGAGCGACTGGATCA
AGACCGGGATGAAGGAGGACCGGCTGATCTATCGCCACTACTTTAACGAACGCACCCAGAAACGCCTGTTCTATGCCGCG
TTCGAGCTTCAGAAGAAGCTCAAACTGACGCGGGAGGTGCCCGCCGATATTCAGGTCCAGATCGGCAGCCAATGGTGGTG
CCTGCGCCGACGCACCGTCGAAGCTGTGCTTGCGATGACACGCAAACGCCGCGACGTGATGCGCTTTTTTGCCTCGACCT
GGATTCCGGATGAGACGTTTTTTCAGACGCTTGTGCGCCACCTCATTCCTGAAGATGAGATCGAAAGTCGCACACTTACG
TTTTTAATGTTCAGCGACTACGGCATGCCGGTGAATTTTTATAACGATCACTATGATCTGTTGCTGGGGCAGGATTTCCT
GTTTGCGCGCAAAATCAGTCCTGATGCAAAAGAACTGAAAACGCGCCTCGGGCGTCTGTATGCCGCGCGCGATGTGGAGT
TCAAAATTTCCAACGAGGGGCGCAACCTTTACAAGTTTCTGTCCGAGCGCGGGCGCACCGGACAGCGTTTTGCACCGCGC
TTCTGGGAAACCGAGAGCAGCCTCGGGCGCGAGCGTGAATTGTTGATCCTCACCTGCAAGAAATGGCATGTGGCCAAACG
TATGCTGGAGCAGATCCGCACGCTCACCAATACGCCCGCGATCGAGTATCTTTTCCACGAAGAAGGCACGCCCCTGCCCG
ATCTTGGCGGCATCCAGCGCACCCTCGCCAAACGCACCCGTCATCGGCGCGCCCTGGTGCGGATGCTGTTTGACTATTAC
GAGACCGACCGGCTGATTATCTGCCTTGATCCGTCCGCGCTCGAACTGATGCATGATTTCTATTCAGACCGGTCCCACAC
GCGGCTCCTGCGGATCGACTGCGATTTTTCGGACAGCTACCTCATTGGCCACGCGCATCGGGTCGGGCTCGCCGGTGAAC
ATGCGGCCAAGGCAACGCTTGAGCGGCTGCTGCCCGCAATCCGCAACGACATCAGCAATGAAATTGACCAAATCCGCGAT
GCGGGTTTTGTGCGCCATTGGACGGTCGCGGAACGCGGCCCCGAGAGCGACAACGCTCTTGCGGTTTCACAGTTTCTGGA
CGTGCCGGTTGAGACCGCCCTTGAGGTGGTGCGCACGCCCTATCTGTTCGCCGACTAG

Upstream 100 bases:

>100_bases
GCCCTATCTGGCGGTCAATGAAGAACAATCTGGTTTATTCAGCCCTCCTTCCACTTTATCAAGGAAACAGTTCGATAAAA
CAGGCTATTGCATCCTAACT

Downstream 100 bases:

>100_bases
TCAACACTGTTGTCCTTCGAGGCCGCGTATTGCCCAAACGACGGGCCTCAGTCTCACAAACAGAGCGTGCACTCGCAGGG
TCACAACCCGTGCTTGGACT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: EpsK Domain Protein; Glycosyl Transferase Family; Glycosyl Transferase Family Protein; Family; EpsK Domain-Containing Protein; Core-2/I-Branching Family; Soluble Lytic Murein Transglycosylase

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MAKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFAKRRVKCGWGEWSLVRATLNA
LEAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKDFIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAA
FELQKKLKLTREVPADIQVQIGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLT
FLMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEGRNLYKFLSERGRTGQRFAPR
FWETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPAIEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYY
ETDRLIICLDPSALELMHDFYSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRD
AGFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD

Sequences:

>Translated_525_residues
MAKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFAKRRVKCGWGEWSLVRATLNA
LEAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKDFIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAA
FELQKKLKLTREVPADIQVQIGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLT
FLMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEGRNLYKFLSERGRTGQRFAPR
FWETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPAIEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYY
ETDRLIICLDPSALELMHDFYSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRD
AGFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD
>Mature_524_residues
AKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFAKRRVKCGWGEWSLVRATLNAL
EAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKDFIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAAF
ELQKKLKLTREVPADIQVQIGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLTF
LMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEGRNLYKFLSERGRTGQRFAPRF
WETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPAIEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYYE
TDRLIICLDPSALELMHDFYSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRDA
GFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61444; Mature: 61313

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFA
CCCEEEEEEECCCHHHHHHHHHCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
KRRVKCGWGEWSLVRATLNALEAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKD
EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEHHHHHHHHHHCCCCHH
FIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAAFELQKKLKLTREVPADIQVQ
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
IGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLT
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEE
FLMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEG
EEEEECCCCCEEECCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
RNLYKFLSERGRTGQRFAPRFWETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPA
HHHHHHHHHCCCCCCCCCCHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCC
IEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYYETDRLIICLDPSALELMHDF
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
YSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRD
HCCCCCCEEEEEECCCCCCEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD
CCCEEEEEHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFA
CCEEEEEEECCCHHHHHHHHHCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
KRRVKCGWGEWSLVRATLNALEAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKD
EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEHHHHHHHHHHCCCCHH
FIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAAFELQKKLKLTREVPADIQVQ
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
IGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLT
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEE
FLMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEG
EEEEECCCCCEEECCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
RNLYKFLSERGRTGQRFAPRFWETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPA
HHHHHHHHHCCCCCCCCCCHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCC
IEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYYETDRLIICLDPSALELMHDF
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
YSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRD
HCCCCCCEEEEEECCCCCCEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD
CCCEEEEEHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA