| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082328
Identifier: 99082328
GI number: 99082328
Start: 2628115
End: 2629692
Strand: Direct
Name: 99082328
Synonym: TM1040_2488
Alternate gene names: NA
Gene position: 2628115-2629692 (Clockwise)
Preceding gene: 99082326
Following gene: 99082333
Centisome position: 82.1
GC content: 57.29
Gene sequence:
>1578_bases ATGGCAAAAATCGCCTATATTCTGCTCTGTCACAAGGATCCGGAGGCCATCATTCAGCAGGCCAACCGGCTCACTGCGAC CGGCGATTTTATGGCGATCCACTTTGATGCCCGTGCCAAGACCCGCGACTATCGTGCTATCCGCTCAGCGCTTTCAGACA ATCCCAACGTGACGTTCGCCAAGCGTCGGGTGAAATGTGGTTGGGGCGAATGGTCCTTGGTGCGCGCCACGCTCAATGCG CTGGAGGCAGCTGTCGACGAGTTCCCGCGCGCAACGCATTTTTATATGCTGTCGGGGGATTGCATGGCGATCAAGACGGC GCAATACGCGCGCGCCTTTCTCGATCAGCACGACAAGGATTTCATCGAGAGCTTTGATTTCTTCGAGAGCGACTGGATCA AGACCGGGATGAAGGAGGACCGGCTGATCTATCGCCACTACTTTAACGAACGCACCCAGAAACGCCTGTTCTATGCCGCG TTCGAGCTTCAGAAGAAGCTCAAACTGACGCGGGAGGTGCCCGCCGATATTCAGGTCCAGATCGGCAGCCAATGGTGGTG CCTGCGCCGACGCACCGTCGAAGCTGTGCTTGCGATGACACGCAAACGCCGCGACGTGATGCGCTTTTTTGCCTCGACCT GGATTCCGGATGAGACGTTTTTTCAGACGCTTGTGCGCCACCTCATTCCTGAAGATGAGATCGAAAGTCGCACACTTACG TTTTTAATGTTCAGCGACTACGGCATGCCGGTGAATTTTTATAACGATCACTATGATCTGTTGCTGGGGCAGGATTTCCT GTTTGCGCGCAAAATCAGTCCTGATGCAAAAGAACTGAAAACGCGCCTCGGGCGTCTGTATGCCGCGCGCGATGTGGAGT TCAAAATTTCCAACGAGGGGCGCAACCTTTACAAGTTTCTGTCCGAGCGCGGGCGCACCGGACAGCGTTTTGCACCGCGC TTCTGGGAAACCGAGAGCAGCCTCGGGCGCGAGCGTGAATTGTTGATCCTCACCTGCAAGAAATGGCATGTGGCCAAACG TATGCTGGAGCAGATCCGCACGCTCACCAATACGCCCGCGATCGAGTATCTTTTCCACGAAGAAGGCACGCCCCTGCCCG ATCTTGGCGGCATCCAGCGCACCCTCGCCAAACGCACCCGTCATCGGCGCGCCCTGGTGCGGATGCTGTTTGACTATTAC GAGACCGACCGGCTGATTATCTGCCTTGATCCGTCCGCGCTCGAACTGATGCATGATTTCTATTCAGACCGGTCCCACAC GCGGCTCCTGCGGATCGACTGCGATTTTTCGGACAGCTACCTCATTGGCCACGCGCATCGGGTCGGGCTCGCCGGTGAAC ATGCGGCCAAGGCAACGCTTGAGCGGCTGCTGCCCGCAATCCGCAACGACATCAGCAATGAAATTGACCAAATCCGCGAT GCGGGTTTTGTGCGCCATTGGACGGTCGCGGAACGCGGCCCCGAGAGCGACAACGCTCTTGCGGTTTCACAGTTTCTGGA CGTGCCGGTTGAGACCGCCCTTGAGGTGGTGCGCACGCCCTATCTGTTCGCCGACTAG
Upstream 100 bases:
>100_bases GCCCTATCTGGCGGTCAATGAAGAACAATCTGGTTTATTCAGCCCTCCTTCCACTTTATCAAGGAAACAGTTCGATAAAA CAGGCTATTGCATCCTAACT
Downstream 100 bases:
>100_bases TCAACACTGTTGTCCTTCGAGGCCGCGTATTGCCCAAACGACGGGCCTCAGTCTCACAAACAGAGCGTGCACTCGCAGGG TCACAACCCGTGCTTGGACT
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: EpsK Domain Protein; Glycosyl Transferase Family; Glycosyl Transferase Family Protein; Family; EpsK Domain-Containing Protein; Core-2/I-Branching Family; Soluble Lytic Murein Transglycosylase
Number of amino acids: Translated: 525; Mature: 524
Protein sequence:
>525_residues MAKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFAKRRVKCGWGEWSLVRATLNA LEAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKDFIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAA FELQKKLKLTREVPADIQVQIGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLT FLMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEGRNLYKFLSERGRTGQRFAPR FWETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPAIEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYY ETDRLIICLDPSALELMHDFYSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRD AGFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD
Sequences:
>Translated_525_residues MAKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFAKRRVKCGWGEWSLVRATLNA LEAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKDFIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAA FELQKKLKLTREVPADIQVQIGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLT FLMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEGRNLYKFLSERGRTGQRFAPR FWETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPAIEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYY ETDRLIICLDPSALELMHDFYSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRD AGFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD >Mature_524_residues AKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFAKRRVKCGWGEWSLVRATLNAL EAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKDFIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAAF ELQKKLKLTREVPADIQVQIGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLTF LMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEGRNLYKFLSERGRTGQRFAPRF WETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPAIEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYYE TDRLIICLDPSALELMHDFYSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRDA GFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61444; Mature: 61313
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFA CCCEEEEEEECCCHHHHHHHHHCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE KRRVKCGWGEWSLVRATLNALEAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKD EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEHHHHHHHHHHCCCCHH FIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAAFELQKKLKLTREVPADIQVQ HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE IGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLT ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEE FLMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEG EEEEECCCCCEEECCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC RNLYKFLSERGRTGQRFAPRFWETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPA HHHHHHHHHCCCCCCCCCCHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCC IEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYYETDRLIICLDPSALELMHDF EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH YSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRD HCCCCCCEEEEEECCCCCCEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AGFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD CCCEEEEEHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure AKIAYILLCHKDPEAIIQQANRLTATGDFMAIHFDARAKTRDYRAIRSALSDNPNVTFA CCEEEEEEECCCHHHHHHHHHCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE KRRVKCGWGEWSLVRATLNALEAAVDEFPRATHFYMLSGDCMAIKTAQYARAFLDQHDKD EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEHHHHHHHHHHCCCCHH FIESFDFFESDWIKTGMKEDRLIYRHYFNERTQKRLFYAAFELQKKLKLTREVPADIQVQ HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE IGSQWWCLRRRTVEAVLAMTRKRRDVMRFFASTWIPDETFFQTLVRHLIPEDEIESRTLT ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEE FLMFSDYGMPVNFYNDHYDLLLGQDFLFARKISPDAKELKTRLGRLYAARDVEFKISNEG EEEEECCCCCEEECCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC RNLYKFLSERGRTGQRFAPRFWETESSLGRERELLILTCKKWHVAKRMLEQIRTLTNTPA HHHHHHHHHCCCCCCCCCCHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCC IEYLFHEEGTPLPDLGGIQRTLAKRTRHRRALVRMLFDYYETDRLIICLDPSALELMHDF EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH YSDRSHTRLLRIDCDFSDSYLIGHAHRVGLAGEHAAKATLERLLPAIRNDISNEIDQIRD HCCCCCCEEEEEECCCCCCEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AGFVRHWTVAERGPESDNALAVSQFLDVPVETALEVVRTPYLFAD CCCEEEEEHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA