| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082315
Identifier: 99082315
GI number: 99082315
Start: 2614208
End: 2615395
Strand: Reverse
Name: 99082315
Synonym: TM1040_2475
Alternate gene names: NA
Gene position: 2615395-2614208 (Counterclockwise)
Preceding gene: 99082316
Following gene: 99082314
Centisome position: 81.71
GC content: 60.02
Gene sequence:
>1188_bases ATGGATCAGGCGCAAATCGAAATCCAGGTGTTGAGCAGCCTGTCGCAGATCGCGGCATCGGACTGGGACGCCTGTGCCTG CCCAGAGGCTGAGGCCGGCGGGCGACCGCTTGATCCCTTTACCACGCACCGGTTCCTGAGCGCGCTCGAAGACAGCGGCT CGGTAGGGCAGGGGACCGGCTGGCAGCCGCAGTACCTTACCTGCTATCTCGATGGGCAACTGGTCGCCTGCGCGCCGCTC TATGCCAAGGGGCACAGTCAGGGCGAATATATTTTCGATCACAATTGGGCGCATGCCTATGAGCGAGCGGGTGGGCGCTA CTACCCAAAGCTGCAGGTCGCGGTGCCGTTTACCCCGGCCACCGGACGCAGATTTCTTGTGCGTCCAGGCTATGAAGAAA TCGGCATCTCCGCCTTGCTTCAGGGCGCGGTACAATTGGCGTCTGACAATCAGCTGTCCTCTCTTCATGTGACATTCTGC ACCTCCGACGAGGCTGAGGCCGGGCGCGAAATCGGCCTGATGTCACGCAGCTCTCAGCAGTTTCACTGGCTCAATGACGG CTACGCGGGGTTCGAGGCGTTCTTGGCGGCGCTCTCATCTCGCAAGCGCAAGAACATCCGCAAGGAACGCAAACAGGCCC AGGGGTTTGGCGGCAGTATCGAAACCTACACCGGCGCAGACCTGCGTTCCGAGCATTGGGATGCTTTCTGGCGGTTCTAT CAGGATACTGGCAGCCGAAAATGGGGCACGCCCTATCTGACGCGTGCGTTTTTCGAAATCATCCATGACACAATGGCCGA GGACATGGCGTTGGTCTTGGCTGAGCGGGACGGCGTGCCGGTCGCGGGTGCGCTGAACTTTATCGGGGCCAAGACGTTGT ATGGCCGGTACTGGGGGTGCATGGAACATCACCCCTGCCTGCACTTTGAGCTGTGCTACTATCAGGCGATCGATCTTGCC ATCGAGATGGGACTGGATCGGGTCGAGGCTGGCGCGCAGGGCGAGCACAAACTGGCGCGTGGCTATTTGCCAACCGAGAC CCACAGCCTGCATTGGGTCGCAGATCCGGGGTTTCGTGCAGCTATCGAACAATATCTGGAGGCAGAACGGGCTGCCGTAG GAGAAGAGATCGAGATCCTCACCTCCTATGGGCCGTTCAAGAAGACCCATGTGGAGGAACAGGAATGA
Upstream 100 bases:
>100_bases GTCTCGTCGATAACGTCACGTTTGAAAACTATCTTTCTGCCTTCGGCGCTTGATCGGACGCGTCCGGCGCCCAAATAGGG AAGAAGACGACGGGGGCAAG
Downstream 100 bases:
>100_bases CCGAGAAGCTTTCCGATGAAACCCGAGGCCCCCTGCTGGAGCCATTATTCGCTACGGGATGGGAACTTGAAACAGGACGA GATGCGATTCGAAAAACCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 395; Mature: 395
Protein sequence:
>395_residues MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTGWQPQYLTCYLDGQLVACAPL YAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPATGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFC TSDEAEAGREIGLMSRSSQQFHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGCMEHHPCLHFELCYYQAIDLA IEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRAAIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE
Sequences:
>Translated_395_residues MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTGWQPQYLTCYLDGQLVACAPL YAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPATGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFC TSDEAEAGREIGLMSRSSQQFHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGCMEHHPCLHFELCYYQAIDLA IEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRAAIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE >Mature_395_residues MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTGWQPQYLTCYLDGQLVACAPL YAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPATGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFC TSDEAEAGREIGLMSRSSQQFHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGCMEHHPCLHFELCYYQAIDLA IEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRAAIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE
Specific function: Unknown
COG id: COG3146
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44085; Mature: 44085
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTG CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC WQPQYLTCYLDGQLVACAPLYAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPA CCCCEEEEEECCCEEEEECHHHCCCCCCCEEEECCHHHHHHHCCCCCCCEEEEEEECCCC TGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFCTSDEAEAGREIGLMSRSSQQ CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCC FHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGC HHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC MEHHPCLHFELCYYQAIDLAIEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRA CCCCCCEEEHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCCCCCCCEEEEECCCHHH AIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE HHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCC >Mature Secondary Structure MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTG CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC WQPQYLTCYLDGQLVACAPLYAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPA CCCCEEEEEECCCEEEEECHHHCCCCCCCEEEECCHHHHHHHCCCCCCCEEEEEEECCCC TGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFCTSDEAEAGREIGLMSRSSQQ CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCC FHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGC HHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC MEHHPCLHFELCYYQAIDLAIEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRA CCCCCCEEEHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCCCCCCCEEEEECCCHHH AIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE HHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA