Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082315

Identifier: 99082315

GI number: 99082315

Start: 2614208

End: 2615395

Strand: Reverse

Name: 99082315

Synonym: TM1040_2475

Alternate gene names: NA

Gene position: 2615395-2614208 (Counterclockwise)

Preceding gene: 99082316

Following gene: 99082314

Centisome position: 81.71

GC content: 60.02

Gene sequence:

>1188_bases
ATGGATCAGGCGCAAATCGAAATCCAGGTGTTGAGCAGCCTGTCGCAGATCGCGGCATCGGACTGGGACGCCTGTGCCTG
CCCAGAGGCTGAGGCCGGCGGGCGACCGCTTGATCCCTTTACCACGCACCGGTTCCTGAGCGCGCTCGAAGACAGCGGCT
CGGTAGGGCAGGGGACCGGCTGGCAGCCGCAGTACCTTACCTGCTATCTCGATGGGCAACTGGTCGCCTGCGCGCCGCTC
TATGCCAAGGGGCACAGTCAGGGCGAATATATTTTCGATCACAATTGGGCGCATGCCTATGAGCGAGCGGGTGGGCGCTA
CTACCCAAAGCTGCAGGTCGCGGTGCCGTTTACCCCGGCCACCGGACGCAGATTTCTTGTGCGTCCAGGCTATGAAGAAA
TCGGCATCTCCGCCTTGCTTCAGGGCGCGGTACAATTGGCGTCTGACAATCAGCTGTCCTCTCTTCATGTGACATTCTGC
ACCTCCGACGAGGCTGAGGCCGGGCGCGAAATCGGCCTGATGTCACGCAGCTCTCAGCAGTTTCACTGGCTCAATGACGG
CTACGCGGGGTTCGAGGCGTTCTTGGCGGCGCTCTCATCTCGCAAGCGCAAGAACATCCGCAAGGAACGCAAACAGGCCC
AGGGGTTTGGCGGCAGTATCGAAACCTACACCGGCGCAGACCTGCGTTCCGAGCATTGGGATGCTTTCTGGCGGTTCTAT
CAGGATACTGGCAGCCGAAAATGGGGCACGCCCTATCTGACGCGTGCGTTTTTCGAAATCATCCATGACACAATGGCCGA
GGACATGGCGTTGGTCTTGGCTGAGCGGGACGGCGTGCCGGTCGCGGGTGCGCTGAACTTTATCGGGGCCAAGACGTTGT
ATGGCCGGTACTGGGGGTGCATGGAACATCACCCCTGCCTGCACTTTGAGCTGTGCTACTATCAGGCGATCGATCTTGCC
ATCGAGATGGGACTGGATCGGGTCGAGGCTGGCGCGCAGGGCGAGCACAAACTGGCGCGTGGCTATTTGCCAACCGAGAC
CCACAGCCTGCATTGGGTCGCAGATCCGGGGTTTCGTGCAGCTATCGAACAATATCTGGAGGCAGAACGGGCTGCCGTAG
GAGAAGAGATCGAGATCCTCACCTCCTATGGGCCGTTCAAGAAGACCCATGTGGAGGAACAGGAATGA

Upstream 100 bases:

>100_bases
GTCTCGTCGATAACGTCACGTTTGAAAACTATCTTTCTGCCTTCGGCGCTTGATCGGACGCGTCCGGCGCCCAAATAGGG
AAGAAGACGACGGGGGCAAG

Downstream 100 bases:

>100_bases
CCGAGAAGCTTTCCGATGAAACCCGAGGCCCCCTGCTGGAGCCATTATTCGCTACGGGATGGGAACTTGAAACAGGACGA
GATGCGATTCGAAAAACCTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTGWQPQYLTCYLDGQLVACAPL
YAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPATGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFC
TSDEAEAGREIGLMSRSSQQFHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY
QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGCMEHHPCLHFELCYYQAIDLA
IEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRAAIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE

Sequences:

>Translated_395_residues
MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTGWQPQYLTCYLDGQLVACAPL
YAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPATGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFC
TSDEAEAGREIGLMSRSSQQFHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY
QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGCMEHHPCLHFELCYYQAIDLA
IEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRAAIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE
>Mature_395_residues
MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTGWQPQYLTCYLDGQLVACAPL
YAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPATGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFC
TSDEAEAGREIGLMSRSSQQFHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY
QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGCMEHHPCLHFELCYYQAIDLA
IEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRAAIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE

Specific function: Unknown

COG id: COG3146

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44085; Mature: 44085

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTG
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
WQPQYLTCYLDGQLVACAPLYAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPA
CCCCEEEEEECCCEEEEECHHHCCCCCCCEEEECCHHHHHHHCCCCCCCEEEEEEECCCC
TGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFCTSDEAEAGREIGLMSRSSQQ
CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCC
FHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGC
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
MEHHPCLHFELCYYQAIDLAIEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRA
CCCCCCEEEHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCCCCCCCEEEEECCCHHH
AIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE
HHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCC
>Mature Secondary Structure
MDQAQIEIQVLSSLSQIAASDWDACACPEAEAGGRPLDPFTTHRFLSALEDSGSVGQGTG
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
WQPQYLTCYLDGQLVACAPLYAKGHSQGEYIFDHNWAHAYERAGGRYYPKLQVAVPFTPA
CCCCEEEEEECCCEEEEECHHHCCCCCCCEEEECCHHHHHHHCCCCCCCEEEEEEECCCC
TGRRFLVRPGYEEIGISALLQGAVQLASDNQLSSLHVTFCTSDEAEAGREIGLMSRSSQQ
CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCC
FHWLNDGYAGFEAFLAALSSRKRKNIRKERKQAQGFGGSIETYTGADLRSEHWDAFWRFY
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
QDTGSRKWGTPYLTRAFFEIIHDTMAEDMALVLAERDGVPVAGALNFIGAKTLYGRYWGC
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
MEHHPCLHFELCYYQAIDLAIEMGLDRVEAGAQGEHKLARGYLPTETHSLHWVADPGFRA
CCCCCCEEEHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCCCCCCCEEEEECCCHHH
AIEQYLEAERAAVGEEIEILTSYGPFKKTHVEEQE
HHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA