| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is camA [H]
Identifier: 99082311
GI number: 99082311
Start: 2611032
End: 2612243
Strand: Reverse
Name: camA [H]
Synonym: TM1040_2471
Alternate gene names: 99082311
Gene position: 2612243-2611032 (Counterclockwise)
Preceding gene: 99082314
Following gene: 99082310
Centisome position: 81.61
GC content: 58.83
Gene sequence:
>1212_bases ATGACTCATATCGCTGTGATTGGCGCAGGTCAGGCAGGGTCCTCCCTGGTTGCCAAGCTGCGCAAATGCGGATTTGACGG TGAGATCACCCTGATCGGTGCCGAGAAGGTGCTCCCGTATCAACGCCCTCCGCTGTCCAAGGCCTATTTGCTGGGTGAAA TGGAACTTGAGCGCCTGTTTCTGCGGCCCGAGAGTTTTTATGCCGAGAACAACATCACCCTGCGTCTTGGTACCAAGGTG GATGCGATCGACGCGGCTGCAAAGACTTTGCAGATCGGCGACGAAACGCTGTCCTATGATCAGCTTGTGCTCACGACTGG GTCGCACCCACGTCACCTGCCTGCTGCCATCGGTGGCGATTTGGGCGGTGTGCATGTTGTGCGCGACCTTAAGGATGTAG ACGCGATGGCCCCCGCGGTTACGGATGGCGCGCGCGCATTGATTGTCGGCGGCGGTTATATCGGCCTCGAGGCGGCCGCG GTCTGCGCCAAACGGGGTGTATCAGTCACGTTGGTTGAAATGGCGGACCGCATTTTGCAACGAGTCGCCGCGCCAGAGAC TTCCGATTACTTCCGCGCGCTGCACAGCGCGCAAGGTGTAGACATCCGCGAGGGCGTGGGCCTGTCGCATCTGGAGGGAG ACGCAGGCAAGGTGACCTGCGCGGTGCTGGCGGATGGCACCCGTCTCGATGTGGATTTTGTGGTCGTTGGTGTCGGGATC ACCCCAGCCTCTGAACTGGCCGCAGACGCGGGGCTCGAGATCGAAAACGGCATTCGCACGGATGAGCTGGGCCGCACCTC GGATCCGGCAATCTGGGCCGCAGGCGATTGCGCATCCTTTCCGTATAAGGGCCAGCGAATCCGCTTGGAAAGCGTGCCAA ACGCAATTGATCAGGCCGAAGTGGTGGCGGAAAATCTCCTAGGGGCAGAAAAAGCCTATGTGGCTACGCCCTGGTTCTGG TCGGATCAATACGATGTGAAACTGCAAATTGCGGGTCTGAATTCAGGCTATGACAATGTTGTGACGCGTCAGGGCGCAGA TGGCTCCATGTCCTTCTGGTATTACACCGGGGATCAACTGGTGGCTGTGGATGCGATGAATGATCCACGCGCTTACATGG TAGCAAAACGCTTGATCGAAGCCGGAAAAACGGCGGACAAGGCGATTGTGGTCGATCCCGAAGCGGATCTGAAGCCGCTC CTCAAGGCATGA
Upstream 100 bases:
>100_bases TGGGGCGCCCTGGCGATTTTGTGCAATTGCATCCCGGCGCGCCCTCCATGTAGGGTTCGCTCGAACGGTATATCAACTGC ATCAGGAGACAAGAGCCCAG
Downstream 100 bases:
>100_bases GGATCATTGCCGGCGCGTTTCGGGGCCGCGCCCTCGCCTCCGTGGGCAAGGGCGATGCGGGCGCGCATTTGCGCCCGACC ACCGACCGGGTCCGCGAAAG
Product: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
Products: Oxidized Ferredoxin; NADH; cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol; NAD [C]
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MTHIAVIGAGQAGSSLVAKLRKCGFDGEITLIGAEKVLPYQRPPLSKAYLLGEMELERLFLRPESFYAENNITLRLGTKV DAIDAAAKTLQIGDETLSYDQLVLTTGSHPRHLPAAIGGDLGGVHVVRDLKDVDAMAPAVTDGARALIVGGGYIGLEAAA VCAKRGVSVTLVEMADRILQRVAAPETSDYFRALHSAQGVDIREGVGLSHLEGDAGKVTCAVLADGTRLDVDFVVVGVGI TPASELAADAGLEIENGIRTDELGRTSDPAIWAAGDCASFPYKGQRIRLESVPNAIDQAEVVAENLLGAEKAYVATPWFW SDQYDVKLQIAGLNSGYDNVVTRQGADGSMSFWYYTGDQLVAVDAMNDPRAYMVAKRLIEAGKTADKAIVVDPEADLKPL LKA
Sequences:
>Translated_403_residues MTHIAVIGAGQAGSSLVAKLRKCGFDGEITLIGAEKVLPYQRPPLSKAYLLGEMELERLFLRPESFYAENNITLRLGTKV DAIDAAAKTLQIGDETLSYDQLVLTTGSHPRHLPAAIGGDLGGVHVVRDLKDVDAMAPAVTDGARALIVGGGYIGLEAAA VCAKRGVSVTLVEMADRILQRVAAPETSDYFRALHSAQGVDIREGVGLSHLEGDAGKVTCAVLADGTRLDVDFVVVGVGI TPASELAADAGLEIENGIRTDELGRTSDPAIWAAGDCASFPYKGQRIRLESVPNAIDQAEVVAENLLGAEKAYVATPWFW SDQYDVKLQIAGLNSGYDNVVTRQGADGSMSFWYYTGDQLVAVDAMNDPRAYMVAKRLIEAGKTADKAIVVDPEADLKPL LKA >Mature_402_residues THIAVIGAGQAGSSLVAKLRKCGFDGEITLIGAEKVLPYQRPPLSKAYLLGEMELERLFLRPESFYAENNITLRLGTKVD AIDAAAKTLQIGDETLSYDQLVLTTGSHPRHLPAAIGGDLGGVHVVRDLKDVDAMAPAVTDGARALIVGGGYIGLEAAAV CAKRGVSVTLVEMADRILQRVAAPETSDYFRALHSAQGVDIREGVGLSHLEGDAGKVTCAVLADGTRLDVDFVVVGVGIT PASELAADAGLEIENGIRTDELGRTSDPAIWAAGDCASFPYKGQRIRLESVPNAIDQAEVVAENLLGAEKAYVATPWFWS DQYDVKLQIAGLNSGYDNVVTRQGADGSMSFWYYTGDQLVAVDAMNDPRAYMVAKRLIEAGKTADKAIVVDPEADLKPLL KA
Specific function: The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21389617, Length=386, Percent_Identity=29.2746113989637, Blast_Score=165, Evalue=9e-41, Organism=Homo sapiens, GI226437568, Length=386, Percent_Identity=29.2746113989637, Blast_Score=164, Evalue=1e-40, Organism=Homo sapiens, GI65787454, Length=386, Percent_Identity=29.2746113989637, Blast_Score=164, Evalue=1e-40, Organism=Homo sapiens, GI4757732, Length=333, Percent_Identity=26.4264264264264, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI22202629, Length=333, Percent_Identity=26.4264264264264, Blast_Score=96, Evalue=4e-20, Organism=Escherichia coli, GI1788892, Length=404, Percent_Identity=33.6633663366337, Blast_Score=181, Evalue=1e-46, Organism=Escherichia coli, GI1789065, Length=311, Percent_Identity=32.1543408360129, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1789765, Length=317, Percent_Identity=29.0220820189274, Blast_Score=98, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17559934, Length=371, Percent_Identity=26.1455525606469, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI24639257, Length=402, Percent_Identity=29.1044776119403, Blast_Score=139, Evalue=5e-33, Organism=Drosophila melanogaster, GI281359715, Length=402, Percent_Identity=29.1044776119403, Blast_Score=138, Evalue=6e-33, Organism=Drosophila melanogaster, GI281359713, Length=402, Percent_Identity=29.1044776119403, Blast_Score=138, Evalue=6e-33, Organism=Drosophila melanogaster, GI24639250, Length=402, Percent_Identity=29.1044776119403, Blast_Score=138, Evalue=6e-33, Organism=Drosophila melanogaster, GI18543267, Length=402, Percent_Identity=29.1044776119403, Blast_Score=138, Evalue=6e-33, Organism=Drosophila melanogaster, GI24639252, Length=402, Percent_Identity=29.1044776119403, Blast_Score=138, Evalue=6e-33, Organism=Drosophila melanogaster, GI24585130, Length=411, Percent_Identity=26.0340632603406, Blast_Score=125, Evalue=5e-29, Organism=Drosophila melanogaster, GI28573993, Length=357, Percent_Identity=28.2913165266106, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI24581020, Length=357, Percent_Identity=28.2913165266106, Blast_Score=100, Evalue=3e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: 1.18.1.3 [C]
Molecular weight: Translated: 42796; Mature: 42665
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHIAVIGAGQAGSSLVAKLRKCGFDGEITLIGAEKVLPYQRPPLSKAYLLGEMELERLF CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHEEECHHHHHHHH LRPESFYAENNITLRLGTKVDAIDAAAKTLQIGDETLSYDQLVLTTGSHPRHLPAAIGGD CCCHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHCCC LGGVHVVRDLKDVDAMAPAVTDGARALIVGGGYIGLEAAAVCAKRGVSVTLVEMADRILQ CCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEHHHHHHHHHH RVAAPETSDYFRALHSAQGVDIREGVGLSHLEGDAGKVTCAVLADGTRLDVDFVVVGVGI HHHCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECC TPASELAADAGLEIENGIRTDELGRTSDPAIWAAGDCASFPYKGQRIRLESVPNAIDQAE CCHHHHHHHCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEHHCCCHHHHHH VVAENLLGAEKAYVATPWFWSDQYDVKLQIAGLNSGYDNVVTRQGADGSMSFWYYTGDQL HHHHHHCCCCCCEEECCEEECCCEEEEEEEEECCCCCCHHEEECCCCCCEEEEEEECCEE VAVDAMNDPRAYMVAKRLIEAGKTADKAIVVDPEADLKPLLKA EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHCC >Mature Secondary Structure THIAVIGAGQAGSSLVAKLRKCGFDGEITLIGAEKVLPYQRPPLSKAYLLGEMELERLF CEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHEEECHHHHHHHH LRPESFYAENNITLRLGTKVDAIDAAAKTLQIGDETLSYDQLVLTTGSHPRHLPAAIGGD CCCHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHCCC LGGVHVVRDLKDVDAMAPAVTDGARALIVGGGYIGLEAAAVCAKRGVSVTLVEMADRILQ CCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEHHHHHHHHHH RVAAPETSDYFRALHSAQGVDIREGVGLSHLEGDAGKVTCAVLADGTRLDVDFVVVGVGI HHHCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECC TPASELAADAGLEIENGIRTDELGRTSDPAIWAAGDCASFPYKGQRIRLESVPNAIDQAE CCHHHHHHHCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEHHCCCHHHHHH VVAENLLGAEKAYVATPWFWSDQYDVKLQIAGLNSGYDNVVTRQGADGSMSFWYYTGDQL HHHHHHCCCCCCEEECCEEECCCEEEEEEEEECCCCCCHHEEECCCCCCEEEEEEECCEE VAVDAMNDPRAYMVAKRLIEAGKTADKAIVVDPEADLKPLLKA EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FAD. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Reduced Ferredoxin; NAD(+); 3-phenylpropionate; NADH; Proton; O2 [C]
Specific reaction: Reduced Ferredoxin + NAD(+) = Oxidized Ferredoxin + NADH. 3-phenylpropionate + NADH + Proton + O2 = cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2180940; 2613690; 3003058; 12011076; 11524002 [H]