Click here to switch to the map view.

The map label for this gene is pecM [H]

Identifier: 99082295

GI number: 99082295

Start: 2597317

End: 2598135

Strand: Direct

Name: pecM [H]

Synonym: TM1040_2455

Alternate gene names: 99082295

Gene position: 2597317-2598135 (Clockwise)

Preceding gene: 99082293

Following gene: 99082298

Centisome position: 81.14

GC content: 62.88

Gene sequence:

>819_bases
GTGACCACAAGCTTCCTGCCCGGAGAATCTCCCTTTCTGGTCGCACTCTTGCGCGCGTTGCCCGCAGGAATCTTGTTGCT
GGCACTGGTGCGCCAGCTGCCGCCTGCGGCCTTGTTGCCAAAGATCATGGTCCTCGGTGCGCTGAACTTTTCCGTCTTTT
GGACGCTCCTGTTCCTGTCGGCCTACCAGTTGCCAGGCGGGGTCGCGGCGACATTGGGGGCGGTGCAACCTCTCTTTGTC
GTTGGCCTGTCGGGTGCGTTGCTCGGAACACAGATCCATAGCAAAGCCGTTGCCGCCGCGATGCTGGGGATGGTGGGCGT
CGCACTGTTGGTTCTGGGACCGGATGCGCGCCTCAACGTAACGGGTGTGCTGGCAGGTCTGGGTGGCGCGCTCTCGATGG
CATCCGGAGTGGTTCTGAGCCGCAAATGGCAACCTGACGTCCCCGCGCTGACCTTTACCGCGTGGCAACTCACCGCCGGG
GGAATCCTGCTTATACCCGTCGCCGTGATCGCACTGCCAGAATGGCCAAGCCTCAGCGCGCATAACCTTATGGGTCTTGG
CTATATGAGCTTGATTGGCGGCGCGCTGACCTATGTCCTTTGGTTTCGCGGCATCGCGCGCATCGCCCCCGCACAAATCT
CGCTCTTGGGGGTGTTCAGCCCGCTGACCGCCGTGATCCTCGGGATGGCTTTTGCAAACGAGACCTTCTCGATCTGGCAG
GCTATCGGGGCATTTGTCGCCCTGTTCTCGGTCTGGTTGGGCGGGCAAGCGCCGCGCGCGCGCCCCAAGTCCCCCGCCAC
GCAGGTGCCAGCCGAATAA

Upstream 100 bases:

>100_bases
TATCTCGACATCAAGATATACAAGAGTAGAAATCATGACACAGACAAGAGACCTTGCGCTCACGGCGCTGGCGCCCGCGA
TTTGGGGAAGCAGCTATTTT

Downstream 100 bases:

>100_bases
CTCTGGCGCGCCCTCGACGGGGGTGCGCTTGCAAGCTTCAGCTTATTCCTTATCCGACGGGATCAACGCGCCGTCGAAAT
TGTCGGGCAACTGCGATGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTTSFLPGESPFLVALLRALPAGILLLALVRQLPPAALLPKIMVLGALNFSVFWTLLFLSAYQLPGGVAATLGAVQPLFV
VGLSGALLGTQIHSKAVAAAMLGMVGVALLVLGPDARLNVTGVLAGLGGALSMASGVVLSRKWQPDVPALTFTAWQLTAG
GILLIPVAVIALPEWPSLSAHNLMGLGYMSLIGGALTYVLWFRGIARIAPAQISLLGVFSPLTAVILGMAFANETFSIWQ
AIGAFVALFSVWLGGQAPRARPKSPATQVPAE

Sequences:

>Translated_272_residues
MTTSFLPGESPFLVALLRALPAGILLLALVRQLPPAALLPKIMVLGALNFSVFWTLLFLSAYQLPGGVAATLGAVQPLFV
VGLSGALLGTQIHSKAVAAAMLGMVGVALLVLGPDARLNVTGVLAGLGGALSMASGVVLSRKWQPDVPALTFTAWQLTAG
GILLIPVAVIALPEWPSLSAHNLMGLGYMSLIGGALTYVLWFRGIARIAPAQISLLGVFSPLTAVILGMAFANETFSIWQ
AIGAFVALFSVWLGGQAPRARPKSPATQVPAE
>Mature_271_residues
TTSFLPGESPFLVALLRALPAGILLLALVRQLPPAALLPKIMVLGALNFSVFWTLLFLSAYQLPGGVAATLGAVQPLFVV
GLSGALLGTQIHSKAVAAAMLGMVGVALLVLGPDARLNVTGVLAGLGGALSMASGVVLSRKWQPDVPALTFTAWQLTAGG
ILLIPVAVIALPEWPSLSAHNLMGLGYMSLIGGALTYVLWFRGIARIAPAQISLLGVFSPLTAVILGMAFANETFSIWQA
IGAFVALFSVWLGGQAPRARPKSPATQVPAE

Specific function: Involved in pectinase, cellulase, and blue pigment regulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 28095; Mature: 27964

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTSFLPGESPFLVALLRALPAGILLLALVRQLPPAALLPKIMVLGALNFSVFWTLLFLS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AYQLPGGVAATLGAVQPLFVVGLSGALLGTQIHSKAVAAAMLGMVGVALLVLGPDARLNV
HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEH
TGVLAGLGGALSMASGVVLSRKWQPDVPALTFTAWQLTAGGILLIPVAVIALPEWPSLSA
HHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHCCCCCCCCC
HNLMGLGYMSLIGGALTYVLWFRGIARIAPAQISLLGVFSPLTAVILGMAFANETFSIWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
AIGAFVALFSVWLGGQAPRARPKSPATQVPAE
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8022282 [H]