Click here to switch to the map view.

The map label for this gene is yiaD [H]

Identifier: 99082288

GI number: 99082288

Start: 2589284

End: 2589949

Strand: Reverse

Name: yiaD [H]

Synonym: TM1040_2448

Alternate gene names: 99082288

Gene position: 2589949-2589284 (Counterclockwise)

Preceding gene: 99082289

Following gene: 99082287

Centisome position: 80.91

GC content: 61.26

Gene sequence:

>666_bases
ATGTCTTTTGCAAAACTCCCCGCTCTTGGCGTATTGACCGCCGCCGTTGCCCTCAGTGCCTGTGATGATCCTGCGTCCTA
CGGTGCGCCCGGCGGGATCAACCGCTCTCAGAACGGGGCTATCATCGGTGGCTTGATCGGGGCTGGCATTGGCGCTGCGA
CTGCGGATGACGACAAGGCGGAAACGATTATCGGGACCGCTGCGGTTGGAGCGCTTGCGGGCGGGCTGATTGGTCGTGAA
CTCGACAAGCAGGAGGCCGAGCTGCGCCAGAGTCTCGACAATGACTCAATTTCGATCGTCAATACCGGCGATCGCCTGAT
CGTCTCGCTGCCCAATGATCTGACGTTTGCCACCGACAGTGCAGCGATCTCCTCGGTGGTGCGCAGCGACCTGCGCAAGG
TGGCGGGTAGCCTGCAGCGCTATCCCGGCAGCATCGTGCAAGTTATCGGTCATACGGACAGCGATGGGGCTGCGTCTTAT
AACTACAGCTTGTCCGAGCGCCGTGCCAACGCCGTCGCGGATGAGATTGCAGCAGGCGGCGTGTCCTACGGCCGTATGCG
GATCATTGGGCGCGGCGAAGACCAACCCGTTGCCAGCAACCTCACGCCCGAAGGCAAAGCGCGTAATCGGCGGGTTGAAA
TCGTGATCATCCCGCAAGCAAGCTGA

Upstream 100 bases:

>100_bases
TGCGCGGCGTAATGCGCACAATATCTATACATAATGTCGGTGCGCCGAGCAGAACACGCGCGCAAAGCCAGACAGGTTTG
AAGAAGAAAAGGTAGACAGT

Downstream 100 bases:

>100_bases
TCGCACTTCTAAAGGTGCACAAGATATGGCCGCGCTCCCAGAGCGCGGCCTTTTGCGTACCTCGGGGCACCATGTGTGGC
AATGCACACCCCGCCTGCGG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSFAKLPALGVLTAAVALSACDDPASYGAPGGINRSQNGAIIGGLIGAGIGAATADDDKAETIIGTAAVGALAGGLIGRE
LDKQEAELRQSLDNDSISIVNTGDRLIVSLPNDLTFATDSAAISSVVRSDLRKVAGSLQRYPGSIVQVIGHTDSDGAASY
NYSLSERRANAVADEIAAGGVSYGRMRIIGRGEDQPVASNLTPEGKARNRRVEIVIIPQAS

Sequences:

>Translated_221_residues
MSFAKLPALGVLTAAVALSACDDPASYGAPGGINRSQNGAIIGGLIGAGIGAATADDDKAETIIGTAAVGALAGGLIGRE
LDKQEAELRQSLDNDSISIVNTGDRLIVSLPNDLTFATDSAAISSVVRSDLRKVAGSLQRYPGSIVQVIGHTDSDGAASY
NYSLSERRANAVADEIAAGGVSYGRMRIIGRGEDQPVASNLTPEGKARNRRVEIVIIPQAS
>Mature_220_residues
SFAKLPALGVLTAAVALSACDDPASYGAPGGINRSQNGAIIGGLIGAGIGAATADDDKAETIIGTAAVGALAGGLIGREL
DKQEAELRQSLDNDSISIVNTGDRLIVSLPNDLTFATDSAAISSVVRSDLRKVAGSLQRYPGSIVQVIGHTDSDGAASYN
YSLSERRANAVADEIAAGGVSYGRMRIIGRGEDQPVASNLTPEGKARNRRVEIVIIPQAS

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=210, Percent_Identity=40.4761904761905, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788957, Length=108, Percent_Identity=36.1111111111111, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22560; Mature: 22429

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFAKLPALGVLTAAVALSACDDPASYGAPGGINRSQNGAIIGGLIGAGIGAATADDDKA
CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCH
ETIIGTAAVGALAGGLIGRELDKQEAELRQSLDNDSISIVNTGDRLIVSLPNDLTFATDS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCEECCCH
AAISSVVRSDLRKVAGSLQRYPGSIVQVIGHTDSDGAASYNYSLSERRANAVADEIAAGG
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCHHHHHHHHHHHHHHHCC
VSYGRMRIIGRGEDQPVASNLTPEGKARNRRVEIVIIPQAS
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
SFAKLPALGVLTAAVALSACDDPASYGAPGGINRSQNGAIIGGLIGAGIGAATADDDKA
CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCH
ETIIGTAAVGALAGGLIGRELDKQEAELRQSLDNDSISIVNTGDRLIVSLPNDLTFATDS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCEECCCH
AAISSVVRSDLRKVAGSLQRYPGSIVQVIGHTDSDGAASYNYSLSERRANAVADEIAAGG
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCHHHHHHHHHHHHHHHCC
VSYGRMRIIGRGEDQPVASNLTPEGKARNRRVEIVIIPQAS
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]