Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082263

Identifier: 99082263

GI number: 99082263

Start: 2563205

End: 2564347

Strand: Direct

Name: 99082263

Synonym: TM1040_2423

Alternate gene names: NA

Gene position: 2563205-2564347 (Clockwise)

Preceding gene: 99082262

Following gene: 99082265

Centisome position: 80.08

GC content: 60.54

Gene sequence:

>1143_bases
ATGAAAGCTGATGCGCTTCTGAACTCTTATATCGACCTGAACCTTCTGGTTTGTGCCGGCGCCCTGCTGTGGCTCGCCGC
GCGTTGGGTTTTGCGACGAACGGCTCTGGCGACCGCCTATGGGCCGCAGCTGCGTTTGCTCAATGGGATGACTGTCCTAC
TGGCAGCCATGCCGTTCCTTGTTGTCGCCCTCAATGCCATCGGTATCGGTCACCCGCCCACCCTCTCGGATGTCCTCGTA
TCCCAATATCTGCAAGGCAATGTCGGCATGTCCGCAGTGCAGTTTGAATCGATGATTGGCCTGCGCGAAGATCTGGTCCG
AGACCTTGTTTACGGCGCAACCTTTGGGAGCCGGGTTGCCACTGTCTTTGTGGTGATCGGAACAGCTGTCTCGCTCTTTT
TGCTGGGCTCCGCCATTCTGCGCCTGCACCGTGCATTGGCCTCCGCCTATCGCTGGAAGCGCATTGGCCGCGTTGATCTG
CTTTTGAGCGACGATACCGCAGTGGCATACTCCACCCGCGGCCTCTTTCGCCGGTATGTGGTGTTGCCGACGTCGCTGCT
GAATGACCCGCAAGATCTGCGCCTGACGCTGGCGCATGAGCTTCAGCATTTTCGCCAGAGGGATGTGGAAATCGCCTTCC
TGATGGAATGCCTGCGACCGCTCCTGTTCTGGAACCCCGCCTTCTATCTTTGGCGCCGCGACATGCGGGCGGTCCGCGAA
TATGCCTGCGATCAGGCTCTTAGCACCAAGGGCCGCTTCGACCCGCGCAGCTATTGCGAATGTTTAATCCGCGCCACCGA
ACGGGCGCGCAAATCCCCTGTCTTCCTCAGCCCGCGCAGCCCCTCTGTCGCCCTGCTTGAGCGTCGCGAAATCTTGCATA
CGCCCATGCTTGCACGCCGCATCATCGCGGTTACCGAGCAGCCGCCACGCGGCCGGCTCGGGCTTGTCTGGGGAGGTGTC
TCTACAGCCATTGGCTGCGCCGTTATCGCAACTGCCTTCCTGATCCAGCGCCCAACGGACTGGAGCCACGATCGGCTGAT
GCTCTCAACAGTAGTCAATCTGGAGCGCATGGCGCAGCGCAGTTCGAACCAGGTCGCCGGGCCGCAGTGGACAAGCTCCA
TTTTGATCCCCGCAGGTCGCTAA

Upstream 100 bases:

>100_bases
GCTCCCGCGGCCCTCGTGGCGCGGTTGGTCGATGATGAGGATATCACTGATGCCATGCTTGAGGAAATGCGGGCCTTGCT
GAACGAAAGGCTGGGGGACA

Downstream 100 bases:

>100_bases
AAGACCCCAAGCCCCACCCTATCCGGATCGAGGCTTTGCCCATCGCGTTCAGGCTGGGCAATTGTACCTGCCCCTGCCTT
CAGCGTGTGGGAACGGGAAC

Product: peptidase M56, BlaR1

Products: NA

Alternate protein names: BlaR1 Peptidase; Slt Family Transglycosylase

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFLVVALNAIGIGHPPTLSDVLV
SQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVATVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDL
LLSDDTAVAYSTRGLFRRYVVLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE
YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARRIIAVTEQPPRGRLGLVWGGV
STAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQRSSNQVAGPQWTSSILIPAGR

Sequences:

>Translated_380_residues
MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFLVVALNAIGIGHPPTLSDVLV
SQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVATVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDL
LLSDDTAVAYSTRGLFRRYVVLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE
YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARRIIAVTEQPPRGRLGLVWGGV
STAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQRSSNQVAGPQWTSSILIPAGR
>Mature_380_residues
MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFLVVALNAIGIGHPPTLSDVLV
SQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVATVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDL
LLSDDTAVAYSTRGLFRRYVVLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE
YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARRIIAVTEQPPRGRLGLVWGGV
STAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQRSSNQVAGPQWTSSILIPAGR

Specific function: Unknown

COG id: COG4219

COG function: function code KT; Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42440; Mature: 42440

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VVALNAIGIGHPPTLSDVLVSQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVA
HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
TVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDLLLSDDTAVAYSTRGLFRRYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH
VLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE
HCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
IIAVTEQPPRGRLGLVWGGVSTAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQR
HHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
SSNQVAGPQWTSSILIPAGR
CCCCCCCCCCCCCEECCCCC
>Mature Secondary Structure
MKADALLNSYIDLNLLVCAGALLWLAARWVLRRTALATAYGPQLRLLNGMTVLLAAMPFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VVALNAIGIGHPPTLSDVLVSQYLQGNVGMSAVQFESMIGLREDLVRDLVYGATFGSRVA
HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
TVFVVIGTAVSLFLLGSAILRLHRALASAYRWKRIGRVDLLLSDDTAVAYSTRGLFRRYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH
VLPTSLLNDPQDLRLTLAHELQHFRQRDVEIAFLMECLRPLLFWNPAFYLWRRDMRAVRE
HCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
YACDQALSTKGRFDPRSYCECLIRATERARKSPVFLSPRSPSVALLERREILHTPMLARR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
IIAVTEQPPRGRLGLVWGGVSTAIGCAVIATAFLIQRPTDWSHDRLMLSTVVNLERMAQR
HHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
SSNQVAGPQWTSSILIPAGR
CCCCCCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA