Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082265

Identifier: 99082265

GI number: 99082265

Start: 2565459

End: 2566295

Strand: Direct

Name: 99082265

Synonym: TM1040_2425

Alternate gene names: NA

Gene position: 2565459-2566295 (Clockwise)

Preceding gene: 99082263

Following gene: 99082272

Centisome position: 80.15

GC content: 56.15

Gene sequence:

>837_bases
GTGGTGGAAGAAATGAGCTATGAACTCAAAAGCGCTGATGCGCTTGTGAGCGAGTTATGCAGCTATGGCGAGTCCAAGCT
GCGCGTCAGGGGACCAGAGCGGGACTTTGGGACACCTTACATCAGTTTTCTCGGCGGAACCGAAGTCTTTGGTCGCTTTG
TGGAGCGGCCCTTCACGCAGGGCATAGAGAGCCAGCTTGGCCTGACCTGTATCAATCTGGGATGTGTGAATGCCGGTATT
GATGCCTTTCTCCATGATGAGCCCCTGATGGAGATCGCGGCAAGCGGACAAATGACCGTGTTGCAGGTCATGGGGGCACA
GAACCTCACCAACAGTTTCTACAAGGTACATCCGCGGCGCAATGACAGGTTCCTGCGCGCCTATGATACGCTGGCGCATC
TGTTTCCAGAGGTTGATTTTACCGACTTCAACTTCAACAAGCATCTGCTCACATCTCTCAAGGCGATCTCGGAGGATCGG
TTTGAGCGGGTCTGTGCAGGCTTGCAGGAAACCTGGCTGACACGGATGGGACGCGTTGTTGACGCGCTCGACGGGCGCGT
TGTTCTGCTGTGGATGCGCTATGATATGTCCACAACCGACGTTTTGGGCCCCGCCCCCTGCCTGGTGGACCGATCAATGG
TGGATGTCTTGCGTCCGCGTCTCTTTGATGTGATCGAACTGGAAGTCACAACTGCAGGCCAGGCTCAGGACATTCCGGGG
ATGATATTCGGTCCGATGGATCTGCCCGCTGCGCGGTTGATGATCGGCCCCAAAGAGCATGACCGGATCGCCGATGTGGT
GGCATCACGGCTGCTAAAGATGCTCTCGACAGCGTAA

Upstream 100 bases:

>100_bases
CGCGTCCGCAGAAACAAGGCCGATTGCCTCAGTTTTCAGCAAATTCACGGATTAGCAGTTTGGAAAGATTCGGACGGCAG
TATGGCTCTTGGGTGAAAAA

Downstream 100 bases:

>100_bases
CTCGAGCCCTTCGCTCAAGAAAAAAGGCCCATGCGCTGCATGGGCCTTTTCAAATCCAAAGCGGTGGGGTTTAACCCAGC
TTTTCCGTCAGCTCAGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MVEEMSYELKSADALVSELCSYGESKLRVRGPERDFGTPYISFLGGTEVFGRFVERPFTQGIESQLGLTCINLGCVNAGI
DAFLHDEPLMEIAASGQMTVLQVMGAQNLTNSFYKVHPRRNDRFLRAYDTLAHLFPEVDFTDFNFNKHLLTSLKAISEDR
FERVCAGLQETWLTRMGRVVDALDGRVVLLWMRYDMSTTDVLGPAPCLVDRSMVDVLRPRLFDVIELEVTTAGQAQDIPG
MIFGPMDLPAARLMIGPKEHDRIADVVASRLLKMLSTA

Sequences:

>Translated_278_residues
MVEEMSYELKSADALVSELCSYGESKLRVRGPERDFGTPYISFLGGTEVFGRFVERPFTQGIESQLGLTCINLGCVNAGI
DAFLHDEPLMEIAASGQMTVLQVMGAQNLTNSFYKVHPRRNDRFLRAYDTLAHLFPEVDFTDFNFNKHLLTSLKAISEDR
FERVCAGLQETWLTRMGRVVDALDGRVVLLWMRYDMSTTDVLGPAPCLVDRSMVDVLRPRLFDVIELEVTTAGQAQDIPG
MIFGPMDLPAARLMIGPKEHDRIADVVASRLLKMLSTA
>Mature_278_residues
MVEEMSYELKSADALVSELCSYGESKLRVRGPERDFGTPYISFLGGTEVFGRFVERPFTQGIESQLGLTCINLGCVNAGI
DAFLHDEPLMEIAASGQMTVLQVMGAQNLTNSFYKVHPRRNDRFLRAYDTLAHLFPEVDFTDFNFNKHLLTSLKAISEDR
FERVCAGLQETWLTRMGRVVDALDGRVVLLWMRYDMSTTDVLGPAPCLVDRSMVDVLRPRLFDVIELEVTTAGQAQDIPG
MIFGPMDLPAARLMIGPKEHDRIADVVASRLLKMLSTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31119; Mature: 31119

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEEMSYELKSADALVSELCSYGESKLRVRGPERDFGTPYISFLGGTEVFGRFVERPFTQ
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHCHHHH
GIESQLGLTCINLGCVNAGIDAFLHDEPLMEIAASGQMTVLQVMGAQNLTNSFYKVHPRR
HHHHHHCEEEEEHHHHHHCCHHHHCCCHHHHHHCCCCCHHHHHHCCHHHHCHHEEECCCC
NDRFLRAYDTLAHLFPEVDFTDFNFNKHLLTSLKAISEDRFERVCAGLQETWLTRMGRVV
CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALDGRVVLLWMRYDMSTTDVLGPAPCLVDRSMVDVLRPRLFDVIELEVTTAGQAQDIPG
HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
MIFGPMDLPAARLMIGPKEHDRIADVVASRLLKMLSTA
EEECCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVEEMSYELKSADALVSELCSYGESKLRVRGPERDFGTPYISFLGGTEVFGRFVERPFTQ
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHCHHHH
GIESQLGLTCINLGCVNAGIDAFLHDEPLMEIAASGQMTVLQVMGAQNLTNSFYKVHPRR
HHHHHHCEEEEEHHHHHHCCHHHHCCCHHHHHHCCCCCHHHHHHCCHHHHCHHEEECCCC
NDRFLRAYDTLAHLFPEVDFTDFNFNKHLLTSLKAISEDRFERVCAGLQETWLTRMGRVV
CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALDGRVVLLWMRYDMSTTDVLGPAPCLVDRSMVDVLRPRLFDVIELEVTTAGQAQDIPG
HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
MIFGPMDLPAARLMIGPKEHDRIADVVASRLLKMLSTA
EEECCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA