Click here to switch to the map view.

The map label for this gene is ctb [H]

Identifier: 99082228

GI number: 99082228

Start: 2507721

End: 2508134

Strand: Reverse

Name: ctb [H]

Synonym: TM1040_2388

Alternate gene names: 99082228

Gene position: 2508134-2507721 (Counterclockwise)

Preceding gene: 99082230

Following gene: 99082224

Centisome position: 78.36

GC content: 59.18

Gene sequence:

>414_bases
ATGCAAGACGTGCAACCATTGGCGCGGTTCCAGATCTCCGCCGATGACATCAGGCGGGTGGTTTCGGTCTTTTACGGCGA
AGTCCGCCGCCATCCGGTACTTGCGCCCGTTTTTAACGCGCATGTTGAGGATTGGCCTCAACATGAGGAGAAGATTGCCA
ATTTCTGGCGCAACGCGATCCTGCGCGAGCGGGTCTATGACGGGTTTCCGATGCGCGAACACCTGTCCCGACCTGATGTG
CGGGCAGAGCATTTCCCGGTCTGGCTTGGTCTGTTCCACGCGGTTCTTGAGCGCGAGGTTACGGCTGAACAGGCGCTGCA
ATGGGGCCATCTCGCCGATCGCATCGGCGAAGGGTTCCGCACCGGGATCGAATCCATTCGCCAGCCCAAAGATGAGCCGC
CGAAACTGATTTGA

Upstream 100 bases:

>100_bases
AGTGCAGCTGCGGCCACAATCGCTGCGACGTCATGCGCGCTTTAGATGGCCTGCCAATGCTGCTAGGCACGATGCGGGAA
ACCGGGTGAAGGACATAACC

Downstream 100 bases:

>100_bases
CCCGATGTCACGTGTTGCTGTGTTATCTGGCAAATCCGCTGAGCGCGCGTTGAAGCACCTTCCCGAGGCGTGGTTTGTCT
TCGCTCTCAAAGGCCATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Cj-trHbP; Truncated Hb [H]

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MQDVQPLARFQISADDIRRVVSVFYGEVRRHPVLAPVFNAHVEDWPQHEEKIANFWRNAILRERVYDGFPMREHLSRPDV
RAEHFPVWLGLFHAVLEREVTAEQALQWGHLADRIGEGFRTGIESIRQPKDEPPKLI

Sequences:

>Translated_137_residues
MQDVQPLARFQISADDIRRVVSVFYGEVRRHPVLAPVFNAHVEDWPQHEEKIANFWRNAILRERVYDGFPMREHLSRPDV
RAEHFPVWLGLFHAVLEREVTAEQALQWGHLADRIGEGFRTGIESIRQPKDEPPKLI
>Mature_137_residues
MQDVQPLARFQISADDIRRVVSVFYGEVRRHPVLAPVFNAHVEDWPQHEEKIANFWRNAILRERVYDGFPMREHLSRPDV
RAEHFPVWLGLFHAVLEREVTAEQALQWGHLADRIGEGFRTGIESIRQPKDEPPKLI

Specific function: Has been suggested to be involved in cytochrome c peroxidase or P450-like oxygen chemistry or cyanide detoxification. The high oxygen affinity of this protein suggests that it probably does not function as an oxygen transporter [H]

COG id: COG2346

COG function: function code R; Truncated hemoglobins

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the truncated hemoglobin family. Group III subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012292
- InterPro:   IPR009050
- InterPro:   IPR001486 [H]

Pfam domain/function: PF01152 Bac_globin [H]

EC number: NA

Molecular weight: Translated: 16083; Mature: 16083

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDVQPLARFQISADDIRRVVSVFYGEVRRHPVLAPVFNAHVEDWPQHEEKIANFWRNAI
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
LRERVYDGFPMREHLSRPDVRAEHFPVWLGLFHAVLEREVTAEQALQWGHLADRIGEGFR
HHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGIESIRQPKDEPPKLI
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQDVQPLARFQISADDIRRVVSVFYGEVRRHPVLAPVFNAHVEDWPQHEEKIANFWRNAI
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
LRERVYDGFPMREHLSRPDVRAEHFPVWLGLFHAVLEREVTAEQALQWGHLADRIGEGFR
HHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGIESIRQPKDEPPKLI
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]