| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082200
Identifier: 99082200
GI number: 99082200
Start: 2481123
End: 2481845
Strand: Reverse
Name: 99082200
Synonym: TM1040_2360
Alternate gene names: NA
Gene position: 2481845-2481123 (Counterclockwise)
Preceding gene: 99082201
Following gene: 99082199
Centisome position: 77.53
GC content: 60.17
Gene sequence:
>723_bases GTGTATTCCCAATCCCCTCAAGAGGTCTCCGCCTCCCGCGCAGAGGCTGCGTTTCACCCGCGTTCTGCGCCTTTTATATT CGCTTGCCTCATCACCCTCGCCGTGGGTGTGGCACTTTGGGGGGCGGCAGCCCACTATCCTGCGTTTCAGGATGCGTTAC ATGAGGACGGCCCGGTCGAGAAAGTCTCTGCGGTACTTTGGGGGCTCTGCGCTGTCATGGTGCTCTACTTTGTGGGCGGC ACCGCGCTGCGCACCCAGTGGCAGCTCTCCGCGCTGTTTTTCCTACTGTGTGGCCGCGAGCTGGACTTCGACAAGCGCTT TCTGAGCGAGGGCATCCTGCAACTGCGGCTTTATTCCGGGGGCGCGCCTTTGTGGGAGAAGGTGATCGGCATTGCCATAA TTGCCTTGGTGCTCTTGGTGGTGTGGCGTCTGCTGCGCGTGAACCTGCCCGAGCTTCTTAAGGGGCTGCGTCAACTGAGC CTCTGGTCCTGGGGTGGTGCACTTGCGGTGAGTGCAATTGTTGTCGCCAAAGGCGTTGATGGCATCGGACGCAAATTCGC GGATTTTGGCGTTATTCTGGATCCCACCCTGATCGCGCGCGCACTGGTCTACGAGGAGTTACTGGAGCTATTTGCTGCGG CGATCGTCGCGTGGTCGATCTGCCACTTTGAGGGTCAGAGACGACGCGCACGGGGCGGTCGGTCAATGGCTTGTTGCTCT TGA
Upstream 100 bases:
>100_bases TGCGGTTTACACAGCTGCGTCACAAAGCGGTTACAGTCCCCTTGAACCTGAACCGTTTCGTTCGAATATGCAGTGGCACC TTCATTAACTCGGTGCTGTC
Downstream 100 bases:
>100_bases AACTTCGTCTAGACTGCCGACAAAATTTGACAGCAGGACGTGAGCATCATGCCGGTATTACGCGAAACCCAATTCAGCGC AGAGATCACTTGGTTGGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MYSQSPQEVSASRAEAAFHPRSAPFIFACLITLAVGVALWGAAAHYPAFQDALHEDGPVEKVSAVLWGLCAVMVLYFVGG TALRTQWQLSALFFLLCGRELDFDKRFLSEGILQLRLYSGGAPLWEKVIGIAIIALVLLVVWRLLRVNLPELLKGLRQLS LWSWGGALAVSAIVVAKGVDGIGRKFADFGVILDPTLIARALVYEELLELFAAAIVAWSICHFEGQRRRARGGRSMACCS
Sequences:
>Translated_240_residues MYSQSPQEVSASRAEAAFHPRSAPFIFACLITLAVGVALWGAAAHYPAFQDALHEDGPVEKVSAVLWGLCAVMVLYFVGG TALRTQWQLSALFFLLCGRELDFDKRFLSEGILQLRLYSGGAPLWEKVIGIAIIALVLLVVWRLLRVNLPELLKGLRQLS LWSWGGALAVSAIVVAKGVDGIGRKFADFGVILDPTLIARALVYEELLELFAAAIVAWSICHFEGQRRRARGGRSMACCS >Mature_240_residues MYSQSPQEVSASRAEAAFHPRSAPFIFACLITLAVGVALWGAAAHYPAFQDALHEDGPVEKVSAVLWGLCAVMVLYFVGG TALRTQWQLSALFFLLCGRELDFDKRFLSEGILQLRLYSGGAPLWEKVIGIAIIALVLLVVWRLLRVNLPELLKGLRQLS LWSWGGALAVSAIVVAKGVDGIGRKFADFGVILDPTLIARALVYEELLELFAAAIVAWSICHFEGQRRRARGGRSMACCS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26218; Mature: 26218
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSQSPQEVSASRAEAAFHPRSAPFIFACLITLAVGVALWGAAAHYPAFQDALHEDGPVE CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHH KVSAVLWGLCAVMVLYFVGGTALRTQWQLSALFFLLCGRELDFDKRFLSEGILQLRLYSG HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECC GAPLWEKVIGIAIIALVLLVVWRLLRVNLPELLKGLRQLSLWSWGGALAVSAIVVAKGVD CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC GIGRKFADFGVILDPTLIARALVYEELLELFAAAIVAWSICHFEGQRRRARGGRSMACCS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MYSQSPQEVSASRAEAAFHPRSAPFIFACLITLAVGVALWGAAAHYPAFQDALHEDGPVE CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHH KVSAVLWGLCAVMVLYFVGGTALRTQWQLSALFFLLCGRELDFDKRFLSEGILQLRLYSG HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECC GAPLWEKVIGIAIIALVLLVVWRLLRVNLPELLKGLRQLSLWSWGGALAVSAIVVAKGVD CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC GIGRKFADFGVILDPTLIARALVYEELLELFAAAIVAWSICHFEGQRRRARGGRSMACCS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA