Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082188

Identifier: 99082188

GI number: 99082188

Start: 2469041

End: 2470285

Strand: Direct

Name: 99082188

Synonym: TM1040_2348

Alternate gene names: NA

Gene position: 2469041-2470285 (Clockwise)

Preceding gene: 99082187

Following gene: 99082189

Centisome position: 77.13

GC content: 58.55

Gene sequence:

>1245_bases
ATGACGAGTGGGATTTCGCAAACGGAGGCTGTGCCGATCGCAGCCTGCACAATCAGTCGAGACGTTCAGAACTTCGATCT
GCTGATCGAAGACATGGAAGCGGTTATGGGCGAGGCTTGGGGCGACCTTGGCTTTACTGAATCGCTCGCGTTTTTCTATC
AACCCGAAGCCGAAACTCTGGAGTTCGTGGCGCTTGCGATTGACGCGGAGGATGAGGACAATCTTCCGCTGATGATAGAG
ATCATCACCCAGGCCAAATCCCGCAACATCAAGGTCATTCTGGTGGCAGAGGATGTGACGCCCGCCGCGCTGCACAAACT
GCTGCGCCAAGGCGCGGATGAATTCATCCCCTACCCTCTGCCGGAACAGGAACTTGCGGCCGCCATTGACCGCTTGCGTA
AACCCGAAGAGGCGCCCGCACCCGCAGCGGCGCCACAGCGGGCACATAAGTTGCATGCAGACAGCCAGCGCGAAGGCGCT
GTGATCGTGACGCAGGGACTTGCCGGGGGGACCGGTGCGTCCACATTTGCCGTCAACCTCGCCTGGGAGCTTGCGGAGCT
CAACTCGGGCGATCGCCCCTCTGTGTGCCTGCTTGATCTCGACCTGCAAACCGGCTCGGTGTCGACCTATCTCGACCTTC
CGCGCCGCGAGGCGGTGATGGAGATGCTGAGCGAAACCGAAGCCATGGATGAGGACATCTTTGGCCAATCCCTGATTTCC
TTTCAGGACAAGCTGCAGGTGCTCACGTCTCCGGCCGATATGGTGCCGCTGGAGTTCATCACGCCCGAAGATATTTTGCG
GGTGGTTGAGATGGCACGGAGCCACTTTGATTTTGTGGTCATCGACATGCCGCACACAATGGTGCAGTGGACCGAAACGG
TGCTGAACCTCGCGCATGTCTATTTTGCGATGATCGAACTGGATATGCGCTCGGCGCAGAACGCCTTGCGCGTCAAACGG
GCCCTTCAGTCCGAAGACCTGCCCTTTGAAAAACTGCGTTTCCTGCTCAACAGAGCCCCGAGATTCACCGACCTCAACGG
CAAAAGCCGGGTGAAGCGCCTTGCTGAAAGTCTTGGCATTTCTATCGACGTGCAACTCCCGGATGGCGGAAAAGCGATCC
TGCACAGCTGTGATCATGGCCAACCGCTGGCGATCTCTGCCCCCAAGAACCCTCTGCGCAAGGAAATCGCCAAGCTGGCG
AAGAACCTGCATGAGCTGGGACAGGCAGAGGCGGAAGCCGCCTAA

Upstream 100 bases:

>100_bases
AACGACACTGATCCCATAGGCGCCGTGTCCCTTGTGAAGGAACCGGCGCTGGTCCAACATCGGCTGGGTGCCGGGGCCAA
ACAATGTGGGGATACTGGCG

Downstream 100 bases:

>100_bases
GTCGCAACGCGACAGCACGGGAAGGTATCGAAATGTTTTCCAAGTACAAAAAGCAATCCTCTGCGCCTGCTGCCCCCGCA
GCGGCCCCTGCCGCGGCTCC

Product: response regulator receiver protein

Products: NA

Alternate protein names: Pilus Assembly Protein CpaE; Response Regulator Receiver Domain-Containing Protein; Septum Site-Determining Protein; Flp Pilus Assembly Protein ATPase CpaE; Flp Pilus Assembly Protein ATPase CpaE-Like Protein; Flp Pilus Assembly Protein ATPase CpaE-Like; Two-Component Response Regulator; Pilus Assembly ATPase CpaE; Response Regulator Receiver; ATPase; Flp Pilus Assembly Response Receiver ATPase CpaE; Flp Pilus Assembly Protein ATPase; Pilus Assembly Protein; Flp Pilus Assembly ATPase CpaE; Response Regulator; Cobyrinic Acid A C-Diamide Synthase; Chromosome Partitioning ATPase; Flp Pilus Assembly Protein; AAA ATPase; PP-Loop Family ATPase; CpaE2 Pilus Assembly Protein

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MTSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETLEFVALAIDAEDEDNLPLMIE
IITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPLPEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGA
VIVTQGLAGGTGASTFAVNLAWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLIS
FQDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHVYFAMIELDMRSAQNALRVKR
ALQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGISIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLA
KNLHELGQAEAEAA

Sequences:

>Translated_414_residues
MTSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETLEFVALAIDAEDEDNLPLMIE
IITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPLPEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGA
VIVTQGLAGGTGASTFAVNLAWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLIS
FQDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHVYFAMIELDMRSAQNALRVKR
ALQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGISIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLA
KNLHELGQAEAEAA
>Mature_413_residues
TSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETLEFVALAIDAEDEDNLPLMIEI
ITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPLPEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGAV
IVTQGLAGGTGASTFAVNLAWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLISF
QDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHVYFAMIELDMRSAQNALRVKRA
LQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGISIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLAK
NLHELGQAEAEAA

Specific function: Unknown

COG id: COG4963

COG function: function code U; Flp pilus assembly protein, ATPase CpaE

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45558; Mature: 45426

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETL
CCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCHHE
EFVALAIDAEDEDNLPLMIEIITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPL
EEEEEEEECCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCHHHHHHHHHCCHHHCCCCCC
PEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGAVIVTQGLAGGTGASTFAVNL
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
AWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLIS
EEEHHHCCCCCCCCEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FQDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHV
HHHHHHHHCCCCHHCCEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
YFAMIELDMRSAQNALRVKRALQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
SIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLAKNLHELGQAEAEAA
EEEEECCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure 
TSGISQTEAVPIAACTISRDVQNFDLLIEDMEAVMGEAWGDLGFTESLAFFYQPEAETL
CCCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCHHE
EFVALAIDAEDEDNLPLMIEIITQAKSRNIKVILVAEDVTPAALHKLLRQGADEFIPYPL
EEEEEEEECCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCHHHHHHHHHCCHHHCCCCCC
PEQELAAAIDRLRKPEEAPAPAAAPQRAHKLHADSQREGAVIVTQGLAGGTGASTFAVNL
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
AWELAELNSGDRPSVCLLDLDLQTGSVSTYLDLPRREAVMEMLSETEAMDEDIFGQSLIS
EEEHHHCCCCCCCCEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FQDKLQVLTSPADMVPLEFITPEDILRVVEMARSHFDFVVIDMPHTMVQWTETVLNLAHV
HHHHHHHHCCCCHHCCEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
YFAMIELDMRSAQNALRVKRALQSEDLPFEKLRFLLNRAPRFTDLNGKSRVKRLAESLGI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
SIDVQLPDGGKAILHSCDHGQPLAISAPKNPLRKEIAKLAKNLHELGQAEAEAA
EEEEECCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA