| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082147
Identifier: 99082147
GI number: 99082147
Start: 2425794
End: 2426714
Strand: Reverse
Name: 99082147
Synonym: TM1040_2307
Alternate gene names: NA
Gene position: 2426714-2425794 (Counterclockwise)
Preceding gene: 99082148
Following gene: 99082146
Centisome position: 75.81
GC content: 61.78
Gene sequence:
>921_bases ATGAGTTCTGACATCCATCTCGCCTTCGCGCATCCCTCCGAACGCTCTGCCGCGACGGCCCGTCCCGGCGCGCTGGACCG GATTTCCCTGCGCGATCACATCGTCGAGGTGGAGATCGGGGCTTTTCAACAGGAACGCGGCACCACGCAGCGTGTATGTT TCAACGTTGTGGTGGAAATCGCGCCACTGCCGGCGGATCTCGATGACGATGTGGATCGTATCCTGTCGTATGACAAGGTG ACCGAGGCCATTGCCCACGAGCTGGCCCGCGAGCGGCTGGCGCTGCTGGAAACCCTGGCGGAGCGCGTGGCAGAGCGGAT CCTCTGGGAGCCGCAGGCGGTGCGGGCCTTTGTGCGGATCGAGAAACTGGATCGTGGCCCGGGCAAGCTGGGGGTGGAGA TCGTACGCTCTGCGGATCAGGTTTCGCACGAGGCCGATGAAGATGTGAAACCGCATCCACGACTGATGTTTCTCTCCAAC GCTGCGATCGACAGCGACAATCTCACTGGTTGGATCGACCAGATGGAATGCCGCGAGCGGCCCTTGATCCTCTGTGTGGG GGCGCATGATCTGGCGCTGCCCCAGACCGGGCACAAATGGACCCAGCGCCGCATTGATTTGCTGGCAATTGAGCAAAATG CCTGGCGTCTGGCGGCGCGGGATTCGCGCTGCAAAGTGGTGGAAACCCGTACTGAGCTGGACTGGGCGATGAAAAATGGC CAGATCTGCGTCTGGGCGCCCTCCAAGATCGTGCTGGATGCGGTCGAAGGTCCCAGCGAGCCGCCATCAAATGCGGTTGC ACTTGCGGCGTGGTTCGCTTCTACTTTCGAAGCAGAAGAAATGATCGTGATTGGCGCGGAGCTGCCGGAGAACCCCGGCG TGCCTCTGCGGGCCCATGCTGAGGAGCAACATACCCTGTGA
Upstream 100 bases:
>100_bases GCACGGCGGGTCTGAGCCTGTTATCCGGCTGGAACGGACCTAAGACTGTGACTCCTGACACAGCCTTTTTCCTGTTCCAA AGCCAGCCGGGGGCCACACC
Downstream 100 bases:
>100_bases GTTACTACCGCCCCCTGGTTCGTCATGGAGATGCGCGCCCCGAGGGCGCCATTCATCTCGCCGGCAGCGCGCTCTGGTTC ACTGAAGTCGAAGTTCTGGA
Product: dihydroneopterin aldolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MSSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEIAPLPADLDDDVDRILSYDKV TEAIAHELARERLALLETLAERVAERILWEPQAVRAFVRIEKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSN AAIDSDNLTGWIDQMECRERPLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNG QICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHAEEQHTL
Sequences:
>Translated_306_residues MSSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEIAPLPADLDDDVDRILSYDKV TEAIAHELARERLALLETLAERVAERILWEPQAVRAFVRIEKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSN AAIDSDNLTGWIDQMECRERPLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNG QICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHAEEQHTL >Mature_305_residues SSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEIAPLPADLDDDVDRILSYDKVT EAIAHELARERLALLETLAERVAERILWEPQAVRAFVRIEKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSNA AIDSDNLTGWIDQMECRERPLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNGQ ICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHAEEQHTL
Specific function: Unknown
COG id: COG1539
COG function: function code H; Dihydroneopterin aldolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34095; Mature: 33964
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEI CCCCEEEEEECCCCCCCCCCCCCCCCEEEHHHEEEEEEECCCHHHCCCHHHHHHHHHHHH APLPADLDDDVDRILSYDKVTEAIAHELARERLALLETLAERVAERILWEPQAVRAFVRI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH EKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSNAAIDSDNLTGWIDQMECRER HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCC PLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNG CEEEEECCCCCCCCCCCCHHHHHCEEEEEEECCCEEEECCCCCCEEEECHHHHHHHCCCC QICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHA CEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECC EEQHTL CCCCCC >Mature Secondary Structure SSDIHLAFAHPSERSAATARPGALDRISLRDHIVEVEIGAFQQERGTTQRVCFNVVVEI CCCEEEEEECCCCCCCCCCCCCCCCEEEHHHEEEEEEECCCHHHCCCHHHHHHHHHHHH APLPADLDDDVDRILSYDKVTEAIAHELARERLALLETLAERVAERILWEPQAVRAFVRI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH EKLDRGPGKLGVEIVRSADQVSHEADEDVKPHPRLMFLSNAAIDSDNLTGWIDQMECRER HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCC PLILCVGAHDLALPQTGHKWTQRRIDLLAIEQNAWRLAARDSRCKVVETRTELDWAMKNG CEEEEECCCCCCCCCCCCHHHHHCEEEEEEECCCEEEECCCCCCEEEECHHHHHHHCCCC QICVWAPSKIVLDAVEGPSEPPSNAVALAAWFASTFEAEEMIVIGAELPENPGVPLRAHA CEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECC EEQHTL CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA